PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026395059.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 489aa MW: 53009.4 Da PI: 8.2373

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026395059.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.9	2.2e-10	90	114	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C +++ t tC++Gd+CkF H+ XP_026395059.1 90 GETDCAHYMLTRTCRFGDTCKFDHP 114 6789********************8 PP
2	zf-CCCH	26	1.6e-08	141	167	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t C++G +CkF+H++ XP_026395059.1 141 PGEPACPYFLKTKKCRFGFKCKFNHPK 167 57899********************96 PP
3	zf-CCCH	40.8	3.8e-13	191	214	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+f+++tG+Ck+G++CkF+H++ XP_026395059.1 191 PPCSFYMKTGICKFGESCKFHHPK 214 89********************96 PP
4	zf-CCCH	38.5	2e-12	265	291	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG CkyG++C+++H++ XP_026395059.1 265 PGEVDCPFYLKTGSCKYGATCRYSHPE 291 57899********************96 PP
5	zf-CCCH	31.6	2.8e-10	339	357	8	26
GGGGTS--TTTTT-SS-SS CS zf-CCCH 8 ffartGtCkyGdrCkFaHg 26 f+++tG Ck+G+rCk++H+ XP_026395059.1 339 FYMKTGDCKFGERCKYHHP 357 9*****************8 PP
6	zf-CCCH	41.5	2.2e-13	386	409	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tG CkyG++C+F H+p XP_026395059.1 386 VVCPFYMKTGACKYGSSCRFDHPP 409 67********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MHMMNHHDRY RFPSISQQSL WPPGVDASSS FSPCFAGTKR TSSEALYHQT YLGTSNTFGQ 60 SEAFYSANNL SKRPRFESTS HLPIYPQRPG ETDCAHYMLT RTCRFGDTCK FDHPIWVPEG 120 GIPDWKEVPL VPLGDTLPER PGEPACPYFL KTKKCRFGFK CKFNHPKDIT KSVDASKIVD 180 LSLLPERPYA PPCSFYMKTG ICKFGESCKF HHPKDIQIPV TGQENGCAEH DASVGSFDSI 240 MSVKPPFVPF TPASLHNTKG LPVRPGEVDC PFYLKTGSCK YGATCRYSHP ERAVISISVA 300 PGLGHAMMTS SASSMNVGLI NPAAMVLPTI DPRLGQATFY MKTGDCKFGE RCKYHHPIDR 360 TAATQSMPKQ DVKLTLAGLP RREGAVVCPF YMKTGACKYG SSCRFDHPPP GEAVAMATVV 420 QGSSSAPLSG KAVAMATTVQ GSSSAPPLGE AVAMPTVTQG SSFAAEDGES NNNNNTIVPE 480 VAISFGSTS

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MHMMNHHDRY RFPSISQQSL WPPGVDASSS FSPCFAGTKR TSSEALYHQT YLGTSNTFGQ  60
SEAFYSANNL SKRPRFESTS HLPIYPQRPG ETDCAHYMLT RTCRFGDTCK FDHPIWVPEG  120
GIPDWKEVPL VPLGDTLPER PGEPACPYFL KTKKCRFGFK CKFNHPKDIT KSVDASKIVD  180
LSLLPERPYA PPCSFYMKTG ICKFGESCKF HHPKDIQIPV TGQENGCAEH DASVGSFDSI  240
MSVKPPFVPF TPASLHNTKG LPVRPGEVDC PFYLKTGSCK YGATCRYSHP ERAVISISVA  300
PGLGHAMMTS SASSMNVGLI NPAAMVLPTI DPRLGQATFY MKTGDCKFGE RCKYHHPIDR  360
TAATQSMPKQ DVKLTLAGLP RREGAVVCPF YMKTGACKYG SSCRFDHPPP GEAVAMATVV  420
QGSSSAPLSG KAVAMATTVQ GSSSAPPLGE AVAMPTVTQG SSFAAEDGES NNNNNTIVPE  480
VAISFGSTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-173	C3H family protein