PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026395616.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

LSD

Protein Properties

Length: 186aa MW: 19459.5 Da PI: 8.5501

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026395616.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39	1.3e-12	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA +V+Ca+C+t+ XP_026395616.1 7 CSGCRSVLLYPRGAANVCCAICNTI 31 ***********************97 PP
2	zf-LSD1	46.6	5.5e-15	48	72	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y rGA+sVRC++C+t+ XP_026395616.1 48 CGGCRTLLMYARGATSVRCSCCHTI 72 ***********************97 PP
3	zf-LSD1	43.2	6.6e-14	92	116	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg C+++L+YP+GApsV+Ca+C+ V XP_026395616.1 92 CGRCHITLMYPYGAPSVKCAVCQYV 116 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence
MQSQLVCSGC RSVLLYPRGA ANVCCAICNT ITAPTVPPPG MDMSQLTCGG CRTLLMYARG 60 ATSVRCSCCH TINLARPPAP APAPNPVAHV NCGRCHITLM YPYGAPSVKC AVCQYVTSTG 120 MSAPTPNSNG QVNRPNWSST TPTPMPSTSA AMRTHSQTVV VENPMSVDES GKLVTNVVVG 180 VTSEKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	2e-59	LSD family protein