PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026395727.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family HD-ZIP
Protein Properties Length: 267aa    MW: 30448 Da    PI: 7.1789
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026395727.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.72.6e-0591116126
                     TT--SS--HHHHHHHHHHHHHSSS-- CS
        Homeobox   1 rrkRttftkeqleeLeelFeknryps 26 
                     rrk+t++t+eq+e+Le+ F+++  + 
  XP_026395727.1  91 RRKKTKLTSEQVEALEKSFQEDIQLE 116
                     89******************976665 PP
2Homeobox26.11.5e-081311642356
                     SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      ++  e++ +L+k+lgL  rqV + FqNrRa+ k
  XP_026395727.1 131 VKLEPERKLKLSKELGLHPRQVATGFQNRRARLK 164
                     67889999************************88 PP
3HD-ZIP_I/II811.8e-261292012192
     HD-ZIP_I/II  21 ee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ++ kLeperK +l++eLgl+prqva  FqnrRAR k kq+E+ y++Lk+ y+ + +en++L++ev eL+e+l+
  XP_026395727.1 129 NRvKLEPERKLKLSKELGLHPRQVATGFQNRRARLKGKQIEQLYSVLKKDYEVVLRENQHLHQEVMELKEKLD 201
                     3459*****************************************************************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    
MANSNYVYCG NTAVRNHRIP FPTSEGGEEQ QQLFVNGGPH YQCDYFAGPQ FPGSVGAEMM  60
KLWSSCVNDQ EAENGGGVHE ANIINNQVDV RRKKTKLTSE QVEALEKSFQ EDIQLEQQTS  120
GSTIQHRKNR VKLEPERKLK LSKELGLHPR QVATGFQNRR ARLKGKQIEQ LYSVLKKDYE  180
VVLRENQHLH QEVMELKEKL DGCRSKQAST ANMEYGSLLQ AEYNKLVDLG NSKTKISERD  240
NYLFNDEVDY YSTASFPYGR GVSSEYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159167RRARLKGKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36610.11e-32HD-ZIP family protein