PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026396560.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 234aa MW: 26269.7 Da PI: 9.2736

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026396560.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	73	2.4e-23	17	65	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krie + rqvtfskRr g++KKA+ELS+LC+ae+a+i+fs+ gk + + XP_026396560.1 17 KRIEKEDARQVTFSKRRGGVFKKAHELSTLCGAEIAIIVFSPAGKPFSF 65 79******************************************96655 PP
2	K-box	13.5	3.1e-06	119	172	22	75
K-box 22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 ++ + + ++++++++ ++ +++L + eL+qL ++++ +k+ ++ +elll+ XP_026396560.1 119 KRGAELKKLMKENKKQFWWDPIDDLGVHELEQLSAAIDDLKNKVADRADELLLT 172 4444445567799*************************9999999999998876 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MAVTRKPSMG RQKIEIKRIE KEDARQVTFS KRRGGVFKKA HELSTLCGAE IAIIVFSPAG 60 KPFSFTHPQN IIDRYLSGNS HQADNMSPTP LVTAHREAKI RELNREYTEA LTRLEAEKKR 120 GAELKKLMKE NKKQFWWDPI DDLGVHELEQ LSAAIDDLKN KVADRADELL LTSYLPGENP 180 GMSSSGTSHS ESSSTITFET KPTIIPNHQQ IHTSSLPHHG YGADFGLYGR NGLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-41	M-type_MADS family protein