PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026396561.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 195aa    MW: 21615.4 Da    PI: 9.5386
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026396561.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.51.8e-231765149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    krie +  rqvtfskRr g++KKA+ELS+LC+ae+a+i+fs+ gk + +
  XP_026396561.1 17 KRIEKEDARQVTFSKRRGGVFKKAHELSTLCGAEIAIIVFSPAGKPFSF 65
                    79******************************************96655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MAVTRKPSIG RQKIEIKRIE KEDARQVTFS KRRGGVFKKA HELSTLCGAE IAIIVFSPAG  60
KPFSFTHPQN IIDRYLYGNS HQADNMSPTP LVTAHREAKI RELNREYTGA LNSAAIDDLK  120
IKVDDRADEL LLTSYLPGKN PGMSSSGTSH SENSSTITFE TKPTIIPDHH QIHTSSLPHH  180
GYGADFGLYG RNGLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-30M-type_MADS family protein