PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026396878.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family C3H
Protein Properties Length: 261aa    MW: 30788.6 Da    PI: 6.055
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026396878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-0694110926
                     GGGTS--TTTTT-SS-SS CS
         zf-CCCH   9 fartGtCkyGdrCkFaHg 26 
                     f r+G+Ck Gd C FaHg
  XP_026396878.1  94 F-RSGECKKGDLCEFAHG 110
                     4.56*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MYRGIHPSFI DISEVQFAEI LSTTNLLETG NSIYIDGDVI YNNDEFRMFI FKIKKCPKSR  60
SHDWTECPYA HRNEKARRRD PRKFRYSGIA CSEFRSGECK KGDLCEFAHG IFEFWLHPSR  120
YRTRLCNAGM FCRRKVCFFA HSVEQLRPET KYKTKHSCCS KNEKSNAVGS IPESSSRTGR  180
RMVYTQQMEL VMMSNEYCHH PSSIKEDWEF LDTFRGLKIE EVEEEDDDDD DNEGDRQVIR  240
NFSYDIPELT PDIDWVSELV N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-62C3H family protein