PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026397508.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MYB

Protein Properties

Length: 423aa MW: 47257.3 Da PI: 9.5781

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026397508.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	9.1e-17	132	177	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v q+G+ +W++I+++++ gR++k+c++rw++ XP_026397508.1 132 RGHWRPAEDSKLKELVSQYGPQNWNLISEKLQ-GRSGKSCRLRWFNQ 177 899***************************.*********996 PP
2	Myb_DNA-binding	52.2	1.4e-16	184	227	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a++++G++ W+ I+r ++ gRt++ +k++w+ XP_026397508.1 184 RRAFSEEEEERLLAAHRLYGNR-WAMISRLFP-GRTDNGVKNHWHV 227 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MTLQQPQQNL QKSSGGDESS YFRRRFQEIN FLSSRPSSPT SLSLSFGPFS SSSSPSKDKS 60 MMSKSSDLSF QVMGGSNDEQ NIKSWSFQTT SEETAIKNEM PCNADYQKQQ DSESFGHGSN 120 QQSTSSVHSI ARGHWRPAED SKLKELVSQY GPQNWNLISE KLQGRSGKSC RLRWFNQLDP 180 RINRRAFSEE EEERLLAAHR LYGNRWAMIS RLFPGRTDNG VKNHWHVIMA RKQREQSNNL 240 SRRSSRKPFP PIPTASTTTY DHQTLLMMKH ADLKLISSYH QKNAAAGGAG ARSESTITTK 300 DDQSTSTCTN LSLNSSSAAR TQPISPNQML FDFQMGPSEE NMMSFSSGCL YSEKTKTGIS 360 KHDSYPMKMV IGLDHHPSGG YSDSNSEISA NDSSVHKRGR RNLNTGDNEA LPFIDFLGVG 420 TTA

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MTLQQPQQNL QKSSGGDESS YFRRRFQEIN FLSSRPSSPT SLSLSFGPFS SSSSPSKDKS  60
MMSKSSDLSF QVMGGSNDEQ NIKSWSFQTT SEETAIKNEM PCNADYQKQQ DSESFGHGSN  120
QQSTSSVHSI ARGHWRPAED SKLKELVSQY GPQNWNLISE KLQGRSGKSC RLRWFNQLDP  180
RINRRAFSEE EEERLLAAHR LYGNRWAMIS RLFPGRTDNG VKNHWHVIMA RKQREQSNNL  240
SRRSSRKPFP PIPTASTTTY DHQTLLMMKH ADLKLISSYH QKNAAAGGAG ARSESTITTK  300
DDQSTSTCTN LSLNSSSAAR TQPISPNQML FDFQMGPSEE NMMSFSSGCL YSEKTKTGIS  360
KHDSYPMKMV IGLDHHPSGG YSDSNSEISA NDSSVHKRGR RNLNTGDNEA LPFIDFLGVG  420
TTA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	2e-67	MYB family protein