PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026398601.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 248aa    MW: 27215.6 Da    PI: 6.8816
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026398601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.43.2e-121150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i +   r+ tf kRr+g+lK   ELS+LC++ ++ i+ ++
  XP_026398601.1 11 IASANARKATFNKRRKGLLKIVRELSTLCGVSACAIVNGP 50
                    677889******************************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MARKKVTLAY IASANARKAT FNKRRKGLLK IVRELSTLCG VSACAIVNGP YDPQPEVWPD  60
EQSEAHRVLM WFKSVPEIEL RNDRKQFNPE SFAKYQIGKI SEQCKRYQQE NHYLEINRMY  120
NSELSLALDE RKDKEAQRKL PDLQKASIPV VQTISDASDD ANITAIPHLL NYPTNANVNV  180
GALENGHGPS GINGGTVTDG AMYGGVVNHH DQGGGAIIDG VGDQEIRIAE AATESSLANP  240
TMVHGGFS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-26M-type_MADS family protein