PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026398602.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 277aa    MW: 30799.6 Da    PI: 4.54
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026398602.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.91.1e-121051344
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    i n+  r  tf kRr  +lKK +E+S LCd++++ i++ +++
  XP_026398602.1 10 IPNSAARRATFRKRRMDLLKKVSEISNLCDVDACAIVYEPDN 51
                    78999********************************98876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MARMKKVAYI PNSAARRATF RKRRMDLLKK VSEISNLCDV DACAIVYEPD NPQPKVWPAR  60
PEAHRVLMRF KSLPEGDQLE NDQESSAENQ MGMTTENSIN QQLENHYVEL CRMFNRALDG  120
ESSIPEPDIH PVDLIDFAWL LDEKHKEVQQ KLLNLQKANA TSASEANTIA IPNPSYSVDT  180
NVNVGVLDEN HVSGINGGTV ADGAMYGGVV NHHDQGGRVM IDGIGDQEIR MAAAAMEALQ  240
IQPLFMDANN LPSVSQSDDQ MVDYLEGYLN NNQMMQG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.18e-24M-type_MADS family protein