PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026400038.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 233aa    MW: 25604 Da    PI: 8.3166
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026400038.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF382.1e-121058251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri +  +r vtfskRr+gi  KA  L   C +++ +i+fs+ gk y++s+
  XP_026400038.1 10 RIVDPNKRMVTFSKRRTGIVNKATQLLKFC-TDIVLIVFSPAGKPYTFSN 58
                    7888999***********************.79***************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MGRRKIDIER IVDPNKRMVT FSKRRTGIVN KATQLLKFCT DIVLIVFSPA GKPYTFSNSS  60
LGVCDIVHRF IADQTKDNKK IKNSSCVQQC RKKNVVVGSD RDSFWWDNID MEKLDSVEKL  120
MSVRKSLAVL KQNLTARKEK LASSALSAEA AASSSPSSTI QDSIVEYTAA EEAATTFAPT  180
TTNKHNAGWK GRDELGLSFE SQFDGKATML KLEDEAGGSD EEVEGGPSTD LAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-17M-type_MADS family protein