PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026401600.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

LSD

Protein Properties

Length: 145aa MW: 15180.8 Da PI: 7.9238

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026401600.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.3	1.2e-13	28	52	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V XP_026401600.1 28 CSGCRNLLLYPVGATSVCCAVCNAV 52 ************************9 PP
2	zf-LSD1	44.4	2.7e-14	67	91	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gC+tlL+Y rGA+sV+C++C+tV XP_026401600.1 67 CAGCHTLLMYIRGATSVQCSCCHTV 91 ************************9 PP
3	zf-LSD1	41.9	1.7e-13	105	129	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V XP_026401600.1 105 CGNCRMLLMYQYGARSVKCAVCNFV 129 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence
MPVPLAPYPT PPAPFTVPPN GAQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTPVPPPGT 60 EMAQLVCAGC HTLLMYIRGA TSVQCSCCHT VNLAMEANQV AHVNCGNCRM LLMYQYGARS 120 VKCAVCNFVT SVGASPSTIE HKFST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	1e-78	LSD family protein