PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026403067.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

ARF

Protein Properties

Length: 683aa MW: 75401.3 Da PI: 6.6901

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026403067.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.5	5.9e-24	167	268	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + ++ XP_026403067.1 167 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVATDLHGVQWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEN 258 99**************************963.3445679********************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_026403067.1 259 GELRLGIRRA 268 999**996 PP
2	Auxin_resp	119.3	3.1e-39	293	375	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 +a+a+st+s+F+v+++Pra ++eFv++++k++k+++++ +vGmRfkm+fe+ed +err+sG+v+gvsdldp+rW++SkWr+Lk XP_026403067.1 293 VANAVSTRSMFHVFHSPRANPAEFVIPYKKYLKSINHPAAVGMRFKMRFEMEDTAERRCSGLVTGVSDLDPYRWRDSKWRCLK 375 689******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence
MEFDLNHDMK EGDNIVSYHG DYDKDGVAGG GGCSLSSSSS CCSSNSASSS IYLELWHACA 60 GPLTSLPKKG SVVVYFPQGH LEQANFSPSL PCSENPSFGL QPQIFCRVVN VQLLANKEND 120 EVYTQLTLFP QPESGDIDLG GKGHEEEVGV EEEGVGDLPS KSTPHMFCKT LTASDTSTHG 180 GFSVPRRAAE DCFPPLDYKQ QRPSQELVAT DLHGVQWRFR HIYRGQPRRH LLTTGWSIFV 240 SQKNLVSGDA VLFLRGENGE LRLGIRRAGR PRNSIPNSIL GDQITNLNIL SPVANAVSTR 300 SMFHVFHSPR ANPAEFVIPY KKYLKSINHP AAVGMRFKMR FEMEDTAERR CSGLVTGVSD 360 LDPYRWRDSK WRCLKVMWDD DLVGDHFDRI SPWEIEPTSS APVLSIPSAP RLKKLRTLES 420 TSPDHPVSGP GGVEFLGFNE SGRSSKVLQG QENLGLRSPF YVGDGKNQVV DFAMPNSTNR 480 SLASSGFQEI GISDRFRAQP STFTGFSGSS RFQVLQGQEI FPSLSVHGRT DFNQIGSDKS 540 NPHSIMFNSY QRPYPNFYPL ASTDVRAMLM PYTDKFKENP DFMTNSQREP MQSNLSSTQR 600 SFSGFSAMTG DEICNSSNPN LVKEQRPVNS VSPPPVTETN LGSHSDELQD GTKVCKLFGF 660 SLTGEVPTSN SPNSSKRSCT KPE

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence

MEFDLNHDMK EGDNIVSYHG DYDKDGVAGG GGCSLSSSSS CCSSNSASSS IYLELWHACA  60
GPLTSLPKKG SVVVYFPQGH LEQANFSPSL PCSENPSFGL QPQIFCRVVN VQLLANKEND  120
EVYTQLTLFP QPESGDIDLG GKGHEEEVGV EEEGVGDLPS KSTPHMFCKT LTASDTSTHG  180
GFSVPRRAAE DCFPPLDYKQ QRPSQELVAT DLHGVQWRFR HIYRGQPRRH LLTTGWSIFV  240
SQKNLVSGDA VLFLRGENGE LRLGIRRAGR PRNSIPNSIL GDQITNLNIL SPVANAVSTR  300
SMFHVFHSPR ANPAEFVIPY KKYLKSINHP AAVGMRFKMR FEMEDTAERR CSGLVTGVSD  360
LDPYRWRDSK WRCLKVMWDD DLVGDHFDRI SPWEIEPTSS APVLSIPSAP RLKKLRTLES  420
TSPDHPVSGP GGVEFLGFNE SGRSSKVLQG QENLGLRSPF YVGDGKNQVV DFAMPNSTNR  480
SLASSGFQEI GISDRFRAQP STFTGFSGSS RFQVLQGQEI FPSLSVHGRT DFNQIGSDKS  540
NPHSIMFNSY QRPYPNFYPL ASTDVRAMLM PYTDKFKENP DFMTNSQREP MQSNLSSTQR  600
SFSGFSAMTG DEICNSSNPN LVKEQRPVNS VSPPPVTETN LGSHSDELQD GTKVCKLFGF  660
SLTGEVPTSN SPNSSKRSCT KPE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein