PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026403172.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

ARF

Protein Properties

Length: 713aa MW: 78309.3 Da PI: 6.8228

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026403172.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.4	5.6e-23	117	218	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g+ W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF +++ XP_026403172.1 117 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNHKKLIAGDSIVFL--RTE 207 89**************************996555555..8999*****************************************..458 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_026403172.1 208 NGDLCVGIRRA 218 8999**997 PP
2	Auxin_resp	114.8	7.9e-38	281	364	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fe+vY+Prast+eF+vk++ v++a++v+++ GmRfkmafetedss++++ +Gt+++ + +dpvrWp+S+Wr+L+ XP_026403172.1 281 AATLAANGQPFEIVYYPRASTPEFCVKASLVSTAMRVPWCGGMRFKMAFETEDSSRISWfMGTISSAQVVDPVRWPGSPWRLLQ 364 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence
MQEMEKNLHS QLDSQLWHAC AGGMVQMPNV NSKVFYFPQG QAEHAHGNVD FGPSPSRVPP 60 LILCRVAAVK YMADPESDEV YSKIKLVPVR NNEPDYEDDG VANNGIGNGS EEKPASFAKT 120 LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQTVLAK DVHGEIWKFR HIYRGTPRRH 180 LLTTGWSTFV NHKKLIAGDS IVFLRTENGD LCVGIRRAKR GIGGGQESLS GWNPAAGNCA 240 SPYAGFSVFL REDDKRNGNG GNLKSGPRGK ERVRPESVIE AATLAANGQP FEIVYYPRAS 300 TPEFCVKASL VSTAMRVPWC GGMRFKMAFE TEDSSRISWF MGTISSAQVV DPVRWPGSPW 360 RLLQVTWDEP DLLQNVKRVS PWLVELVSSM PAIHLSPFSP PRKKLRLPPH PDFPLEGQFT 420 LPSFSTNPLG SSSPLCCISN NTSAGIQGAR HIQFGTSLSD LHFNKLQSGL HPSFFQSLDH 480 APPLTRTQNG LTMNKADSSE DVSWLTIGNS SPSSKKACEA ITPQFVLFGQ PILTEQQMSL 540 SFSSETVSQV VNGNSSSPEK TLSSVSFSPM VNQCPQQENP SSEGFPFLKD RQMIDMGLET 600 GQCKVFMESE DVGRTLDLSV LNSYEELYRK LADMFLIEPP ETLNHVVYLN MTGAVKHAGD 660 EPFSEFKNSA KRLTVLADAG SDNQGKRKWM TGARNAESGI DTSNKTGQLS IFA

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence

MQEMEKNLHS QLDSQLWHAC AGGMVQMPNV NSKVFYFPQG QAEHAHGNVD FGPSPSRVPP  60
LILCRVAAVK YMADPESDEV YSKIKLVPVR NNEPDYEDDG VANNGIGNGS EEKPASFAKT  120
LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQTVLAK DVHGEIWKFR HIYRGTPRRH  180
LLTTGWSTFV NHKKLIAGDS IVFLRTENGD LCVGIRRAKR GIGGGQESLS GWNPAAGNCA  240
SPYAGFSVFL REDDKRNGNG GNLKSGPRGK ERVRPESVIE AATLAANGQP FEIVYYPRAS  300
TPEFCVKASL VSTAMRVPWC GGMRFKMAFE TEDSSRISWF MGTISSAQVV DPVRWPGSPW  360
RLLQVTWDEP DLLQNVKRVS PWLVELVSSM PAIHLSPFSP PRKKLRLPPH PDFPLEGQFT  420
LPSFSTNPLG SSSPLCCISN NTSAGIQGAR HIQFGTSLSD LHFNKLQSGL HPSFFQSLDH  480
APPLTRTQNG LTMNKADSSE DVSWLTIGNS SPSSKKACEA ITPQFVLFGQ PILTEQQMSL  540
SFSSETVSQV VNGNSSSPEK TLSSVSFSPM VNQCPQQENP SSEGFPFLKD RQMIDMGLET  600
GQCKVFMESE DVGRTLDLSV LNSYEELYRK LADMFLIEPP ETLNHVVYLN MTGAVKHAGD  660
EPFSEFKNSA KRLTVLADAG SDNQGKRKWM TGARNAESGI DTSNKTGQLS IFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein