PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026403418.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MYB_related

Protein Properties

Length: 628aa MW: 68873.7 Da PI: 9.0342

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026403418.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.4	1.4e-07	527	576	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_026403418.1 527 RRPFSVHEVEALVHAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 576 6799********************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence
MVFQKRLDYG FNGYQVPRGC RSARGRSSLK RKLEDTQMGA FELLATVAGK LLQEREASPA 60 HSNVSGGIGT TMQATVGKDN VKLEQRDEEK PLKVESCDQG SSGETSLVSK PNQNKCLDEF 120 SHVVSDPASL MVNCDKSVNA EDRNEIVPET CIFNNMLELD TKPPALVSSD SSIGIHPSSG 180 PFPGCRGNVK LVSRDDDDNS SGCTQPSTTP LKSSRTPPRL EDRKIKKVLE SKYWEVAPKL 240 EGELSNTNGY IKPISHNEKV FYTRQRSLRN TLKRRKLDKR AVSTSDGGVS SEVISNSSKN 300 GKNGNTNSLF STTHGGNGVS SSSAAGHESS SQSKDAHVKL SIKSFRVPEL FIEIPETATV 360 GSLKRSVMEA VAAIIGEGLH VGVLYQGKKI RDDSKTLLQT GICDDDKLDG LGFALEPNPT 420 NGSHFSPKDP PYLVQSDVPQ LLTRYPLSPG IDAGLSDASP DTPLTNLTNC VESDHDSVLS 480 PTDMSIDKTM PDSRALVPHP SMSVDALAVV PLHRKSRRSD LVQRRIRRPF SVHEVEALVH 540 AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE PVPQELLDRV 600 LAAHAYWSQQ QAKQQVKQLT GTCLLLKT

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence

MVFQKRLDYG FNGYQVPRGC RSARGRSSLK RKLEDTQMGA FELLATVAGK LLQEREASPA  60
HSNVSGGIGT TMQATVGKDN VKLEQRDEEK PLKVESCDQG SSGETSLVSK PNQNKCLDEF  120
SHVVSDPASL MVNCDKSVNA EDRNEIVPET CIFNNMLELD TKPPALVSSD SSIGIHPSSG  180
PFPGCRGNVK LVSRDDDDNS SGCTQPSTTP LKSSRTPPRL EDRKIKKVLE SKYWEVAPKL  240
EGELSNTNGY IKPISHNEKV FYTRQRSLRN TLKRRKLDKR AVSTSDGGVS SEVISNSSKN  300
GKNGNTNSLF STTHGGNGVS SSSAAGHESS SQSKDAHVKL SIKSFRVPEL FIEIPETATV  360
GSLKRSVMEA VAAIIGEGLH VGVLYQGKKI RDDSKTLLQT GICDDDKLDG LGFALEPNPT  420
NGSHFSPKDP PYLVQSDVPQ LLTRYPLSPG IDAGLSDASP DTPLTNLTNC VESDHDSVLS  480
PTDMSIDKTM PDSRALVPHP SMSVDALAVV PLHRKSRRSD LVQRRIRRPF SVHEVEALVH  540
AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE PVPQELLDRV  600
LAAHAYWSQQ QAKQQVKQLT GTCLLLKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	219	228	RLEDRKIKKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-104	MYB_related family protein