PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026403468.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MYB

Protein Properties

Length: 991aa MW: 111194 Da PI: 9.5912

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026403468.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.1	8.4e-13	336	381	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+e+d +l av+ +G ++W +Ia m gRt+ qc +rw+k l XP_026403468.1 336 RDWTEEDDGQLRTAVEAFGANNWQLIAFNME-GRTGTQCSNRWLKTL 381 57***************************.*********9975 PP
2	Myb_DNA-binding	55.2	1.6e-17	389	433	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grWT eEd++l+ av ++Gg+tW++Ia+ ++ gRt qc++rw + XP_026403468.1 389 GRWTVEEDKRLKVAVLLFGGKTWAKIAQFIP-GRTQAQCRERWVNC 433 8****************************.*********986 PP
3	Myb_DNA-binding	44.4	3.8e-14	442	482	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eEd +l+ av+++G W+++a+ m+ gRt+ c rw XP_026403468.1 442 PWTEEEDCQLKAAVEEYGHC-WSKVAASMP-GRTDSKCLRRWK 482 8***************99.*****.*********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 991 aa Download sequence
MLNYHLFSCI SILSLSPDLE NPDAPREPLS SSEEACNIYQ PSEIPCSSTQ NQSSKLIKWH 60 QSEAGFPNPE AARLFVEALR KNRSCQKFIR SKLLQIEAKI EENKKLKERV KILKDFQVAC 120 KQRAGRAVSL RKDPRIQLIS VPKFRNSQTT KANSKKAGAI SFGPVENSHV AKYRMAMKRF 180 PLCLSRPRWT QTEKDNLWKG IKQQFQEMLL QESIEGFSAS GDSNDLDDIM ASIEDFEVTP 240 ENVRTFLPKV DWERLASTYV TGRSGAECEQ RWLNVEDPLI NHSPWTKNED KKLLYILQQG 300 GIYNWINISI TLGTNRTPFQ CLARFQRSLN ANIIKRDWTE EDDGQLRTAV EAFGANNWQL 360 IAFNMEGRTG TQCSNRWLKT LNPARKRVGR WTVEEDKRLK VAVLLFGGKT WAKIAQFIPG 420 RTQAQCRERW VNCLDPSLNL KPWTEEEDCQ LKAAVEEYGH CWSKVAASMP GRTDSKCLRR 480 WKFLFPHEVP LIQAAKKIKR SALISNFVDR ESERPTLDHN DFVALPGPES VLALESGTTA 540 GKEKKSRREP KLKAAKDLVP CDNIPKRRSS KRSRSEAQMC RGGDSRIQIA DDGETCGEDG 600 IISQKKKSTI RRCSKKNHCE STDLGNNQLI PEDSTTSMIT ESEDKIEDGT VLGRKRKAPY 660 GRLKKNHSIN IDSGNVSLLP EESTTLRITD GDDNTANCGE DDAGSRKKKR MPNKRLKNNQ 720 CTNADSGDIP LLPEDLTVGD DNTANCREDG TGSRKKKKTP NKRLKNNQST NADSGDIPLL 780 PEYVTVGVDN TANCGEDDSF LGRKKEAPSR RLRKIQCTDS ASGDQDISFL TEDLTVLRIG 840 NGDVSIEKSG AISGMKKRVS KRNPKYIQSA NTISGSKDVP EKLAILKVTK REKSSVNQGE 900 VGVAPGNEKS ASNKRLKRSR STEHDSSLMD GDLTIASIAD AISRKKKRSI NKRLKTNNCI 960 QPASANIDNS LCPEDTAIRI NDSEDNYNNK V

Sequence ? help Back to Top

Protein Sequence Length: 991 aa Download sequence

MLNYHLFSCI SILSLSPDLE NPDAPREPLS SSEEACNIYQ PSEIPCSSTQ NQSSKLIKWH  60
QSEAGFPNPE AARLFVEALR KNRSCQKFIR SKLLQIEAKI EENKKLKERV KILKDFQVAC  120
KQRAGRAVSL RKDPRIQLIS VPKFRNSQTT KANSKKAGAI SFGPVENSHV AKYRMAMKRF  180
PLCLSRPRWT QTEKDNLWKG IKQQFQEMLL QESIEGFSAS GDSNDLDDIM ASIEDFEVTP  240
ENVRTFLPKV DWERLASTYV TGRSGAECEQ RWLNVEDPLI NHSPWTKNED KKLLYILQQG  300
GIYNWINISI TLGTNRTPFQ CLARFQRSLN ANIIKRDWTE EDDGQLRTAV EAFGANNWQL  360
IAFNMEGRTG TQCSNRWLKT LNPARKRVGR WTVEEDKRLK VAVLLFGGKT WAKIAQFIPG  420
RTQAQCRERW VNCLDPSLNL KPWTEEEDCQ LKAAVEEYGH CWSKVAASMP GRTDSKCLRR  480
WKFLFPHEVP LIQAAKKIKR SALISNFVDR ESERPTLDHN DFVALPGPES VLALESGTTA  540
GKEKKSRREP KLKAAKDLVP CDNIPKRRSS KRSRSEAQMC RGGDSRIQIA DDGETCGEDG  600
IISQKKKSTI RRCSKKNHCE STDLGNNQLI PEDSTTSMIT ESEDKIEDGT VLGRKRKAPY  660
GRLKKNHSIN IDSGNVSLLP EESTTLRITD GDDNTANCGE DDAGSRKKKR MPNKRLKNNQ  720
CTNADSGDIP LLPEDLTVGD DNTANCREDG TGSRKKKKTP NKRLKNNQST NADSGDIPLL  780
PEYVTVGVDN TANCGEDDSF LGRKKEAPSR RLRKIQCTDS ASGDQDISFL TEDLTVLRIG  840
NGDVSIEKSG AISGMKKRVS KRNPKYIQSA NTISGSKDVP EKLAILKVTK REKSSVNQGE  900
VGVAPGNEKS ASNKRLKRSR STEHDSSLMD GDLTIASIAD AISRKKKRSI NKRLKTNNCI  960
QPASANIDNS LCPEDTAIRI NDSEDNYNNK V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	567	573	RRSSKRS
2	707	717	KKKRMPNKRLK
3	945	955	KKKRMPNKRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.2	1e-178	MYB family protein