PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026404197.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 463aa MW: 52057.1 Da PI: 7.0856

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026404197.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.4	4.2e-12	96	120	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f++rtG C+yG +C+F+H+ XP_026404197.1 96 DEPDCSFYLRTGACRYGLNCRFNHP 120 6899********************8 PP
2	zf-CCCH	35.8	1.3e-11	155	181	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG C++ H++ XP_026404197.1 155 PGEPECKYYLKTGACKYGKDCRYDHPR 181 5799*********************96 PP
3	zf-CCCH	26.8	8.9e-09	202	226	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+f++r G Ck+ +C+F+H+ XP_026404197.1 202 GEKECPFYMRVGSCKFATNCRFHHP 226 7899********************9 PP
4	zf-CCCH	28.9	1.9e-09	344	370	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f r+G Cky + C+F H++ XP_026404197.1 344 PGERECQYFVRNGDCKYRSACRFDHPK 370 5789*********************96 PP
5	zf-CCCH	32.2	1.8e-10	388	413	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++e+C++++ +G+Ck+G+ CkF H+ XP_026404197.1 388 PGEEICSHYSHYGICKFGPACKFDHP 413 589**********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MGEEEDYEKI NSSSSSKSQE QEEIKIESSS PSHSSVAHHH EIHHDPAIIH ALEGDFHNLR 60 LQQHQQHEES NGVNYHKDAI YSNKNGSFLQ YPLRPDEPDC SFYLRTGACR YGLNCRFNHP 120 HNRNKDHVRF QQTHFPESLK VVKEKDNKEE YPERPGEPEC KYYLKTGACK YGKDCRYDHP 180 REKTAVGPAQ HFNFLGLPIR PGEKECPFYM RVGSCKFATN CRFHHPDPGE AVGLDPSSGY 240 HSGMSVPLQS GGTSQSSASW SSPRTSNDPV PYASRSYSGL MASPSQGTQQ NLEWDGYQGP 300 VYPPKGNTNS ASAPFKNNSI RKTDGSKHYR HQQQMATDEF PERPGERECQ YFVRNGDCKY 360 RSACRFDHPK NRLQNSPALS PMGLPLRPGE EICSHYSHYG ICKFGPACKF DHPLNYDGSS 420 AAAPTMSTSD QLTHFDDAAS SGSSRRTGYE NGNGNEAVIQ QLL

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MGEEEDYEKI NSSSSSKSQE QEEIKIESSS PSHSSVAHHH EIHHDPAIIH ALEGDFHNLR  60
LQQHQQHEES NGVNYHKDAI YSNKNGSFLQ YPLRPDEPDC SFYLRTGACR YGLNCRFNHP  120
HNRNKDHVRF QQTHFPESLK VVKEKDNKEE YPERPGEPEC KYYLKTGACK YGKDCRYDHP  180
REKTAVGPAQ HFNFLGLPIR PGEKECPFYM RVGSCKFATN CRFHHPDPGE AVGLDPSSGY  240
HSGMSVPLQS GGTSQSSASW SSPRTSNDPV PYASRSYSGL MASPSQGTQQ NLEWDGYQGP  300
VYPPKGNTNS ASAPFKNNSI RKTDGSKHYR HQQQMATDEF PERPGERECQ YFVRNGDCKY  360
RSACRFDHPK NRLQNSPALS PMGLPLRPGE EICSHYSHYG ICKFGPACKF DHPLNYDGSS  420
AAAPTMSTSD QLTHFDDAAS SGSSRRTGYE NGNGNEAVIQ QLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.2	4e-87	C3H family protein