PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026404883.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

ARF

Protein Properties

Length: 1186aa MW: 132277 Da PI: 6.619

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026404883.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.9	3.4e-22	138	239	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_026404883.1 138 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldfNMQPPA-QELIARDLHDNAWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 229 99***************************9555544.48********************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ XP_026404883.1 230 QQLLLGIRRA 239 889**997 PP
2	Auxin_resp	121.2	7.8e-40	264	347	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFvv+++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ XP_026404883.1 264 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVYsNQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 347 79******************************9989******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1186 aa Download sequence
MKTASHGSGS AVSSATANNN TTEVGGEKKK INSELWHACA GPLVTLPPVG SLVVYFPQGH 60 SEQVAASMQK DADAHIPNYP NLPSKLICLL LNVTLHADAE TDEVYAQMTL QPVSNYDKEA 120 LLASDLALKS NKPQPDFFCK TLTASDTSTH GGFSVPRRAA EKIFPALDFN MQPPAQELIA 180 RDLHDNAWTF RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVLFIRDEKQ QLLLGIRRAN 240 KQPTNISSSV LSSDSMHIGI LAAAAHAAAN NSPFTVFYNP RASPSEFVVP LAKYYKAVYS 300 NQVSLGMRFR MMFETEESGT RRYMGTITGI SDLDPVRWKN SQWRNLQVGW DESTAGERRN 360 RVSLWDIEPV AAPFFICPPP FFRSKRPRQP GMPDDESDLE NLFRRTMPWM GDDLCMKDPM 420 AQNGVIPGFS LAQLMNMQQN PSLGGSSMQP DYMRSLTTPV VQNMTAADLS RQLGFPGSQV 480 LQQNLQFNAH RQSPQPQNLD QLKMPSPLNQ IGSMMRPQQS LNELSPQQRQ DFVNQTISSN 540 QVQAQLLQPQ FQVQQQQHHQ QQQMLSHGQS NQAHTNNLVQ NQQQQQQQQQ QQHQQSQQQQ 600 QQQLQQQQQL QQQQQQQLQQ QQQQQQQMQQ QQLLQQQQQQ QHQQQQLKQQ AQIPPSVQLP 660 HQVSQQLQMS EHQIQLQLLQ KLQQQQQTLL SQQSTQQPSQ PTQLHEQQRQ QSDLPQSLSN 720 TNSLSHPQMV QQQMKNNNIQ QGIRFSHLPQ QHQVQQNLQR QSSSTLAELP GLVLPTDPTA 780 NLLQATHSGL LAPPGCGVQS GVTEDLPSCS TSPSTNCSNV AAQPITSIRS HRSSTPIAEE 840 VAQSSATLLS PGTLEAMSTN PTSIKEQPQH KADIKPTLPL SKSLNQGIVG SQTYLNPLSQ 900 LDYLEASSSA TSVCLSQNDG SLQPNFPLSP FNPQSLLFRD SSQDVDVHVD PRNNVLFGVN 960 IDGPLGIPMT PDTFLVKDMD PVKDFQNNLC SENMLTNYGN TKDIQQEPSS SIVSQSFGVP 1020 DMAFNSMDST ITDSGFLSKG TWGAPAPQLP RLRTFTKVYK RGAVGRSIDI ARYSGYEELK 1080 QDLARRFGIE GQLEDRQRIG WKLVYVDHEN DVLLVGDDPW EEFVNCVRCI KILSPQEVQQ 1140 MSLDGDLGNS MLSNQACSSS DGGNPWKTTG QYDQNSGNPS AGSYDH

Sequence ? help Back to Top

Protein Sequence Length: 1186 aa Download sequence

MKTASHGSGS AVSSATANNN TTEVGGEKKK INSELWHACA GPLVTLPPVG SLVVYFPQGH  60
SEQVAASMQK DADAHIPNYP NLPSKLICLL LNVTLHADAE TDEVYAQMTL QPVSNYDKEA  120
LLASDLALKS NKPQPDFFCK TLTASDTSTH GGFSVPRRAA EKIFPALDFN MQPPAQELIA  180
RDLHDNAWTF RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVLFIRDEKQ QLLLGIRRAN  240
KQPTNISSSV LSSDSMHIGI LAAAAHAAAN NSPFTVFYNP RASPSEFVVP LAKYYKAVYS  300
NQVSLGMRFR MMFETEESGT RRYMGTITGI SDLDPVRWKN SQWRNLQVGW DESTAGERRN  360
RVSLWDIEPV AAPFFICPPP FFRSKRPRQP GMPDDESDLE NLFRRTMPWM GDDLCMKDPM  420
AQNGVIPGFS LAQLMNMQQN PSLGGSSMQP DYMRSLTTPV VQNMTAADLS RQLGFPGSQV  480
LQQNLQFNAH RQSPQPQNLD QLKMPSPLNQ IGSMMRPQQS LNELSPQQRQ DFVNQTISSN  540
QVQAQLLQPQ FQVQQQQHHQ QQQMLSHGQS NQAHTNNLVQ NQQQQQQQQQ QQHQQSQQQQ  600
QQQLQQQQQL QQQQQQQLQQ QQQQQQQMQQ QQLLQQQQQQ QHQQQQLKQQ AQIPPSVQLP  660
HQVSQQLQMS EHQIQLQLLQ KLQQQQQTLL SQQSTQQPSQ PTQLHEQQRQ QSDLPQSLSN  720
TNSLSHPQMV QQQMKNNNIQ QGIRFSHLPQ QHQVQQNLQR QSSSTLAELP GLVLPTDPTA  780
NLLQATHSGL LAPPGCGVQS GVTEDLPSCS TSPSTNCSNV AAQPITSIRS HRSSTPIAEE  840
VAQSSATLLS PGTLEAMSTN PTSIKEQPQH KADIKPTLPL SKSLNQGIVG SQTYLNPLSQ  900
LDYLEASSSA TSVCLSQNDG SLQPNFPLSP FNPQSLLFRD SSQDVDVHVD PRNNVLFGVN  960
IDGPLGIPMT PDTFLVKDMD PVKDFQNNLC SENMLTNYGN TKDIQQEPSS SIVSQSFGVP  1020
DMAFNSMDST ITDSGFLSKG TWGAPAPQLP RLRTFTKVYK RGAVGRSIDI ARYSGYEELK  1080
QDLARRFGIE GQLEDRQRIG WKLVYVDHEN DVLLVGDDPW EEFVNCVRCI KILSPQEVQQ  1140
MSLDGDLGNS MLSNQACSSS DGGNPWKTTG QYDQNSGNPS AGSYDH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein