PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026404884.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

ARF

Protein Properties

Length: 1185aa MW: 132178 Da PI: 6.619

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026404884.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.9	3.4e-22	137	238	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_026404884.1 137 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldfNMQPPA-QELIARDLHDNAWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 228 99***************************9555544.48********************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ XP_026404884.1 229 QQLLLGIRRA 238 889**997 PP
2	Auxin_resp	121.2	7.8e-40	263	346	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFvv+++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ XP_026404884.1 263 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVYsNQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 346 79******************************9989******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1185 aa Download sequence
MKTASHGSGS AVSSATANNN TTEGGEKKKI NSELWHACAG PLVTLPPVGS LVVYFPQGHS 60 EQVAASMQKD ADAHIPNYPN LPSKLICLLL NVTLHADAET DEVYAQMTLQ PVSNYDKEAL 120 LASDLALKSN KPQPDFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFNM QPPAQELIAR 180 DLHDNAWTFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VLFIRDEKQQ LLLGIRRANK 240 QPTNISSSVL SSDSMHIGIL AAAAHAAANN SPFTVFYNPR ASPSEFVVPL AKYYKAVYSN 300 QVSLGMRFRM MFETEESGTR RYMGTITGIS DLDPVRWKNS QWRNLQVGWD ESTAGERRNR 360 VSLWDIEPVA APFFICPPPF FRSKRPRQPG MPDDESDLEN LFRRTMPWMG DDLCMKDPMA 420 QNGVIPGFSL AQLMNMQQNP SLGGSSMQPD YMRSLTTPVV QNMTAADLSR QLGFPGSQVL 480 QQNLQFNAHR QSPQPQNLDQ LKMPSPLNQI GSMMRPQQSL NELSPQQRQD FVNQTISSNQ 540 VQAQLLQPQF QVQQQQHHQQ QQMLSHGQSN QAHTNNLVQN QQQQQQQQQQ QHQQSQQQQQ 600 QQLQQQQQLQ QQQQQQLQQQ QQQQQQMQQQ QLLQQQQQQQ HQQQQLKQQA QIPPSVQLPH 660 QVSQQLQMSE HQIQLQLLQK LQQQQQTLLS QQSTQQPSQP TQLHEQQRQQ SDLPQSLSNT 720 NSLSHPQMVQ QQMKNNNIQQ GIRFSHLPQQ HQVQQNLQRQ SSSTLAELPG LVLPTDPTAN 780 LLQATHSGLL APPGCGVQSG VTEDLPSCST SPSTNCSNVA AQPITSIRSH RSSTPIAEEV 840 AQSSATLLSP GTLEAMSTNP TSIKEQPQHK ADIKPTLPLS KSLNQGIVGS QTYLNPLSQL 900 DYLEASSSAT SVCLSQNDGS LQPNFPLSPF NPQSLLFRDS SQDVDVHVDP RNNVLFGVNI 960 DGPLGIPMTP DTFLVKDMDP VKDFQNNLCS ENMLTNYGNT KDIQQEPSSS IVSQSFGVPD 1020 MAFNSMDSTI TDSGFLSKGT WGAPAPQLPR LRTFTKVYKR GAVGRSIDIA RYSGYEELKQ 1080 DLARRFGIEG QLEDRQRIGW KLVYVDHEND VLLVGDDPWE EFVNCVRCIK ILSPQEVQQM 1140 SLDGDLGNSM LSNQACSSSD GGNPWKTTGQ YDQNSGNPSA GSYDH

Sequence ? help Back to Top

Protein Sequence Length: 1185 aa Download sequence

MKTASHGSGS AVSSATANNN TTEGGEKKKI NSELWHACAG PLVTLPPVGS LVVYFPQGHS  60
EQVAASMQKD ADAHIPNYPN LPSKLICLLL NVTLHADAET DEVYAQMTLQ PVSNYDKEAL  120
LASDLALKSN KPQPDFFCKT LTASDTSTHG GFSVPRRAAE KIFPALDFNM QPPAQELIAR  180
DLHDNAWTFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS VLFIRDEKQQ LLLGIRRANK  240
QPTNISSSVL SSDSMHIGIL AAAAHAAANN SPFTVFYNPR ASPSEFVVPL AKYYKAVYSN  300
QVSLGMRFRM MFETEESGTR RYMGTITGIS DLDPVRWKNS QWRNLQVGWD ESTAGERRNR  360
VSLWDIEPVA APFFICPPPF FRSKRPRQPG MPDDESDLEN LFRRTMPWMG DDLCMKDPMA  420
QNGVIPGFSL AQLMNMQQNP SLGGSSMQPD YMRSLTTPVV QNMTAADLSR QLGFPGSQVL  480
QQNLQFNAHR QSPQPQNLDQ LKMPSPLNQI GSMMRPQQSL NELSPQQRQD FVNQTISSNQ  540
VQAQLLQPQF QVQQQQHHQQ QQMLSHGQSN QAHTNNLVQN QQQQQQQQQQ QHQQSQQQQQ  600
QQLQQQQQLQ QQQQQQLQQQ QQQQQQMQQQ QLLQQQQQQQ HQQQQLKQQA QIPPSVQLPH  660
QVSQQLQMSE HQIQLQLLQK LQQQQQTLLS QQSTQQPSQP TQLHEQQRQQ SDLPQSLSNT  720
NSLSHPQMVQ QQMKNNNIQQ GIRFSHLPQQ HQVQQNLQRQ SSSTLAELPG LVLPTDPTAN  780
LLQATHSGLL APPGCGVQSG VTEDLPSCST SPSTNCSNVA AQPITSIRSH RSSTPIAEEV  840
AQSSATLLSP GTLEAMSTNP TSIKEQPQHK ADIKPTLPLS KSLNQGIVGS QTYLNPLSQL  900
DYLEASSSAT SVCLSQNDGS LQPNFPLSPF NPQSLLFRDS SQDVDVHVDP RNNVLFGVNI  960
DGPLGIPMTP DTFLVKDMDP VKDFQNNLCS ENMLTNYGNT KDIQQEPSSS IVSQSFGVPD  1020
MAFNSMDSTI TDSGFLSKGT WGAPAPQLPR LRTFTKVYKR GAVGRSIDIA RYSGYEELKQ  1080
DLARRFGIEG QLEDRQRIGW KLVYVDHEND VLLVGDDPWE EFVNCVRCIK ILSPQEVQQM  1140
SLDGDLGNSM LSNQACSSSD GGNPWKTTGQ YDQNSGNPSA GSYDH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein