PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026405531.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

ARF

Protein Properties

Length: 1092aa MW: 119720 Da PI: 6.9556

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026405531.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.4	1.3e-23	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_026405531.1 126 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 216 99***************************8544444..48********************************************..888 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_026405531.1 217 KNQLFLGIRRA 227 9999*9986 PP
2	Auxin_resp	116.5	2.2e-38	252	335	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv+++ ++ ka++ ++vsvGmRf+m fete+ss rr++Gt++gvsdld+vrWpnS+Wrs+k XP_026405531.1 252 AAHAAATNSRFTIFYNPRASPSEFVIPLTRFAKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGVSDLDTVRWPNSHWRSVK 335 79*******************************9789****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1092 aa Download sequence
MRLSSSGLNQ QTQEEKRCLN SELWHACAGP LVSLPALGSR VVYFPQGHSE QVAASTNKEV 60 DAHIPNYPNL SPQLICLLHN VTMHADVETD EVYAQMTLQP LSPQEQKDAY LPADMGTANK 120 QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFSQQ PPAQELIARD LHDNEWKFRH 180 IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL FLGIRRAHRP QTVMPSSVLS 240 SDSMHIGLLA AAAHAAATNS RFTIFYNPRA SPSEFVIPLT RFAKAVYHTR VSVGMRFRML 300 FETEESSVRR YMGTITGVSD LDTVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT 360 FPMYPSPFPL RLKRPWPSGL PPFHGKDDDL GVSSPLMWLQ GDSGDRALQS LNFQGLGPWM 420 QQPRLDASML GLQPDMYQAM AAAALQEMRT ADACKQGPTS LLQFPQPQNV SSISDIMQTQ 480 RLPQSQTQNS FLQGIHGVQT QIQAQAHAQA QAPAPAQPQA QLQSLTQAQI QALAQAQVQA 540 FTQAQVQAFT QAQVQALTQA QGQALIQARA QAQSQAHAHA QAQSQAHAHA QAQAQSQAHT 600 QAQAQAQSQA HAQAQAQGQG QSQSQAQSQP QAQSQSHSQS QSQPQSQSHS PSPSPSRARA 660 QTQVQAQSQV HAQAQAQAQA QAHAHAHAHA HTQSQVHSQA QLLHQQLKQR HSFNDQQFHQ 720 LQLQHQQQIS DQQHQQQQNP NNASALSQMP SASLSPTASL QTISSHRQQN FADSSGVPAS 780 TSAVSPLHSL LGSYSQEEAS HLLNLPRTSP LVSSGGWPSK RPAVESLHPS AAAVQNGLSH 840 VDQLEPRQSN ESQNSISLPP FPRRECSVDQ EGGRDPHNHT LFGINIDSTS LLMQNEMPNL 900 RVISGGGTDS TTSPFAASNF LGSAGADFPI NPTSSCLDES GFLQSPDNVG QVNPPTRTFV 960 KVHKSGSFGR SLDISKFSNY HDLRGELARM FGLEGQLEDP LRSGWQLVFV DRENDVLLLG 1020 DDPWQEFVNN VWCIKILSPQ EVQQMGNQDL EVLNSVQRLS GGGSSSCDDD YVNHQDSRNL 1080 TNGIASVGSL DY

Sequence ? help Back to Top

Protein Sequence Length: 1092 aa Download sequence

MRLSSSGLNQ QTQEEKRCLN SELWHACAGP LVSLPALGSR VVYFPQGHSE QVAASTNKEV  60
DAHIPNYPNL SPQLICLLHN VTMHADVETD EVYAQMTLQP LSPQEQKDAY LPADMGTANK  120
QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFSQQ PPAQELIARD LHDNEWKFRH  180
IFRGQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL FLGIRRAHRP QTVMPSSVLS  240
SDSMHIGLLA AAAHAAATNS RFTIFYNPRA SPSEFVIPLT RFAKAVYHTR VSVGMRFRML  300
FETEESSVRR YMGTITGVSD LDTVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT  360
FPMYPSPFPL RLKRPWPSGL PPFHGKDDDL GVSSPLMWLQ GDSGDRALQS LNFQGLGPWM  420
QQPRLDASML GLQPDMYQAM AAAALQEMRT ADACKQGPTS LLQFPQPQNV SSISDIMQTQ  480
RLPQSQTQNS FLQGIHGVQT QIQAQAHAQA QAPAPAQPQA QLQSLTQAQI QALAQAQVQA  540
FTQAQVQAFT QAQVQALTQA QGQALIQARA QAQSQAHAHA QAQSQAHAHA QAQAQSQAHT  600
QAQAQAQSQA HAQAQAQGQG QSQSQAQSQP QAQSQSHSQS QSQPQSQSHS PSPSPSRARA  660
QTQVQAQSQV HAQAQAQAQA QAHAHAHAHA HTQSQVHSQA QLLHQQLKQR HSFNDQQFHQ  720
LQLQHQQQIS DQQHQQQQNP NNASALSQMP SASLSPTASL QTISSHRQQN FADSSGVPAS  780
TSAVSPLHSL LGSYSQEEAS HLLNLPRTSP LVSSGGWPSK RPAVESLHPS AAAVQNGLSH  840
VDQLEPRQSN ESQNSISLPP FPRRECSVDQ EGGRDPHNHT LFGINIDSTS LLMQNEMPNL  900
RVISGGGTDS TTSPFAASNF LGSAGADFPI NPTSSCLDES GFLQSPDNVG QVNPPTRTFV  960
KVHKSGSFGR SLDISKFSNY HDLRGELARM FGLEGQLEDP LRSGWQLVFV DRENDVLLLG  1020
DDPWQEFVNN VWCIKILSPQ EVQQMGNQDL EVLNSVQRLS GGGSSSCDDD YVNHQDSRNL  1080
TNGIASVGSL DY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.1	0.0	ARF family protein