PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026405540.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family GRAS
Protein Properties Length: 556aa    MW: 62739.7 Da    PI: 6.2401
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026405540.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS250.85.4e-771755542374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfs 94 
                     ++lLl c  a+s+g+l+++q+lL  l+elas++gd+++Rla y ++AL ++l++s++++  a +  +++e     +l+ ++l  f+e+sP+++f+
  XP_026405540.1 175 EQLLLPCGVAISTGNLTRVQHLLYVLHELASSSGDANHRLANYGLRALTHHLSSSTTTVRPASSIFASTEP----RLFQRSLlkFYEASPWFTFA 265
                     689***************************************************88777776677666643....333333345*********** PP

            GRAS  95 hltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgv 174
                     + + N+ Il+ ++++     +++Hi+D+++s+G+QWp+Ll+aL+ R+ +++p +RiT+v+s +s+                +  rL++fA+++++
  XP_026405540.1 266 NTISNSSILQVLAQAsksssRTLHILDIGVSHGIQWPTLLEALSRRSnGPTPLVRITVVNSLSSDcsytvspfsVGPPGDDYTTRLRRFAKSINI 360
                     **********9998877777889************************66678*********999999999888777788999************* PP

            GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysa 266
                     ++e++ l ++ l+ l++e++ ++p E+l+V+ +++lh+l +++ + e  r+e+L+++ +l+P  v+++e++  +++ + ++F  +f++++ey + 
  XP_026405540.1 361 DLEIEQLNTHPLQILTPEMITTSPSETLIVCTQFRLHNLNHNTPNDE--RTEFLQFLAKLKPSAVILSENDiaCSCtQCGNFSIGFTRKVEYLWR 453
                     *******999*****************************85554444..6*********************5544445679************** PP

            GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvl 360
                     +++s++  +    + r   Er++++ e++++++ e ++    +   ekW e+++e+GF +  ++e++ +  k+llrk++ +++++v+e++g+++l
  XP_026405540.1 454 FLESTSCAF----KGRDCEERKVFEGEASKAIMSEMEM----NDGREKWCEKMREVGFVSEGFGEDVIDGGKSLLRKYDsNWEMKVDEKDGCAYL 540
                     *****9996....8999999***************999....778889*******************************9999************ PP

            GRAS 361 gWkdrpLvsvSaWr 374
                      Wk++++ ++S W+
  XP_026405540.1 541 LWKGERVSFCSLWK 554
                     *************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    
MSLNKNLHFK SSPSTQTSRY FSFSMITTMT IHEEHEPSLY DHSDDHILDW LEDTIPFLPS  60
FFDDPNYNTT TITNSTTIVS DITEEFQWWD DQDLIIDPNL DLINPTTTTP TTPTTPTTPT  120
TTTNLVPPSQ SKKRKPADVN LEVKNLRPPK KKSTVKPTGN NYNNCNNSKE GRWAEQLLLP  180
CGVAISTGNL TRVQHLLYVL HELASSSGDA NHRLANYGLR ALTHHLSSST TTVRPASSIF  240
ASTEPRLFQR SLLKFYEASP WFTFANTISN SSILQVLAQA SKSSSRTLHI LDIGVSHGIQ  300
WPTLLEALSR RSNGPTPLVR ITVVNSLSSD CSYTVSPFSV GPPGDDYTTR LRRFAKSINI  360
DLEIEQLNTH PLQILTPEMI TTSPSETLIV CTQFRLHNLN HNTPNDERTE FLQFLAKLKP  420
SAVILSENDI ACSCTQCGNF SIGFTRKVEY LWRFLESTSC AFKGRDCEER KVFEGEASKA  480
IMSEMEMNDG REKWCEKMRE VGFVSEGFGE DVIDGGKSLL RKYDSNWEMK VDEKDGCAYL  540
LWKGERVSFC SLWKLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132156KKRKPADVNLEVKNLRPPKKKSTVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-144GRAS family protein