PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026407653.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 28963.8 Da    PI: 10.0706
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026407653.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.89.5e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  XP_026407653.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59
                    79***********************************************96 PP
2K-box1059.1e-358317310100
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     +e ++ +++ e++kLk++ie Lq++qRh++GedL+s+slkeLq+LeqqL+ +lk+iRs+Kn+l++e+i+elqkkek+lqe+n++L k+l+e
  XP_026407653.1  83 TEIDQGNWSLEYSKLKSKIEILQKNQRHFMGEDLQSMSLKELQNLEQQLDVALKQIRSRKNQLMYESISELQKKEKALQEQNNKLGKQLKE 173
                     5667889*******************************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSTD  60
SGMDRILERY ERYSYAEREL VTTEIDQGNW SLEYSKLKSK IEILQKNQRH FMGEDLQSMS  120
LKELQNLEQQ LDVALKQIRS RKNQLMYESI SELQKKEKAL QEQNNKLGKQ LKEKEKEVAA  180
QQQQASQFSQ GQSSPSFLLS QSLPSLNIGS GSYQARGGDN GNEEGNRTQT TRTNTATLMP  240
PWMLRHVNEW K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.16e-84MIKC_MADS family protein