PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026407817.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

RAV

Protein Properties

Length: 387aa MW: 43155.6 Da PI: 8.898

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026407817.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.1	1.8e-12	65	113	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f ++eAaka++ a ++++g XP_026407817.1 65 SQFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEQEAAKAYDIAVQRFRG 113 68998778.8*****3.....5******99**********998 PP
2	B3	96.4	1.9e-30	200	299	1	96
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+ tpsdv+k++rlv+pk++ae++ g + +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk++gLk+g +v F+++ +++ XP_026407817.1 200 FEKAVTPSDVGKLNRLVIPKQHAEKYfpleiGTI-SKGVLLNFEDNEGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLKAGYIVSFQRSTGQDK 293 89*************************96444.5889***********************************************8766777 PP ..EEEE CS B3 91 elvvkv 96 +l++ + XP_026407817.1 294 QLYIDW 299 777766 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MENSCCIDEG TSTTDSVSLS PNTTKLDSSS DKNSSTKLCR MGSGTSVVVD SESGAEAESR 60 KLPSSQFKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEQEA AKAYDIAVQR FRGRDAVTNF 120 KMNVLEEDNI EYIFLNSRSK AEIVDMLRKH TYSDELEHSK RNSTSTVSEN ASGRYSGSNG 180 TGLGLGLDPV LLMKARSHLF EKAVTPSDVG KLNRLVIPKQ HAEKYFPLEI GTISKGVLLN 240 FEDNEGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKGLKAG YIVSFQRSTG QDKQLYIDWK 300 PRINSVNPVP AEIMTGLTQE VLSVNNPVVQ GGQQVVRLFG VNIFKLPVVV MDSCNSSKRM 360 RENDQVDKSL SSSAEYHCKK QCVVGAL

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MENSCCIDEG TSTTDSVSLS PNTTKLDSSS DKNSSTKLCR MGSGTSVVVD SESGAEAESR  60
KLPSSQFKGV VPQPNGRWGA QIYEKHQRVW LGTFNEEQEA AKAYDIAVQR FRGRDAVTNF  120
KMNVLEEDNI EYIFLNSRSK AEIVDMLRKH TYSDELEHSK RNSTSTVSEN ASGRYSGSNG  180
TGLGLGLDPV LLMKARSHLF EKAVTPSDVG KLNRLVIPKQ HAEKYFPLEI GTISKGVLLN  240
FEDNEGKVWR FRYSYWNSSQ SYVLTKGWSR FVKEKGLKAG YIVSFQRSTG QDKQLYIDWK  300
PRINSVNPVP AEIMTGLTQE VLSVNNPVVQ GGQQVVRLFG VNIFKLPVVV MDSCNSSKRM  360
RENDQVDKSL SSSAEYHCKK QCVVGAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25560.1	1e-134	RAV family protein