PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026408040.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family ARF
Protein Properties Length: 841aa    MW: 93863.1 Da    PI: 6.1833
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026408040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23129230199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_026408040.1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 219
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_026408040.1 220 KNQLLLGIRRA 230
                     9999****997 PP
2Auxin_resp116.81.9e-38255338183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seFv++++k+ ka+  ++vsvGmRf+m fete+ss rr++Gt++g+ dldp rWpnS+Wrs+k
  XP_026408040.1 255 AAHAAATNSRFTIFYNPRASPSEFVIPLSKYAKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGIVDLDPARWPNSHWRSVK 338
                     79********************************87599******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    
MKLSSSSGLG QQSHEGSEKR CLNSELWHAC AGPLVSLPTV GSRVVYFPQG HSEQVAASTN  60
KEVDGHIPNY PNLPPQLICQ LHNVTMHADV ETDEVYAQMT LQPLTQQEQK DTYLPADLGI  120
PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQQPPAQELI ARDLHDVEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA SRPQTVMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLSKYAKAVF HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG IVDLDPARWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP  360
LTTFPMYPSL FPLRLKRPWH PGVSSFNDNK DDPTNALMWL RGDTADRSLQ SLNFQGLGMA  420
PWMQQRLDPS LLGNEHDQRY QTITAAALQD IRGGDPMKQQ YMQFQQPLQY LQQSCNPNQL  480
LQEQQIIQQS HPQQILHAQS QTMSDNQSSP ILQQPPNGQH SQNQQSQQHQ HNFQQNFQIP  540
NNQFEQQETP MSTFVHKPDF TDSNITFSAP LSPSIQNMLG SICPEGSGNL LNFSRTSQSM  600
LNDQQNQQSW APKFSYSQAN NFGNSGSLPP FPGKDGIVEP DNCSGDMQTQ QFFGVNMDSS  660
PLLIPGAVPT LGSTSIDAEV SPMPFDGSGY QRSLFGCVDD SSEFVQSAAP VDPPTRTFVK  720
VYKSGSTVGR SLDIGRFSSY DELREELGQM FGVEGQLGPL RSGWQLVFVD RENDVLLLGD  780
DPWEAFVNNV WYIKILSPED VLKLGKHGIE SLSSNGQRLN SNTCDSRNLV SGISSVGSLE  840
Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein