PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026409316.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 201aa MW: 22885.6 Da PI: 6.7968

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026409316.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	83.7	1.1e-26	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien rqvtf+kRr g+lKKA+ELSvLCda+v +iifss+gklye + XP_026409316.1 9 KRIENPVHRQVTFCKRRSGLLKKAKELSVLCDADVGIIIFSSHGKLYELA 58 79*********************************************965 PP
2	K-box	57.7	5e-20	85	173	12	100
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++ ++++++a +k+ei+ Lq+ +R + G + + + l+eL Le++Le +++iRs+K+++++++i+ l++ke l+ +n+ L++k+ee XP_026409316.1 85 KQSLESEEDIATMKQEIQLLQKGLRYMFGGGAGIMGLEELDALEKHLELWIRNIRSTKMQIMFQEIQMLKNKEGILKAANEILQEKIEE 173 445568899******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence
MARGKVQLKR IENPVHRQVT FCKRRSGLLK KAKELSVLCD ADVGIIIFSS HGKLYELATK 60 GTMEEVIDRY AETSRGAQIA EGVQKQSLES EEDIATMKQE IQLLQKGLRY MFGGGAGIMG 120 LEELDALEKH LELWIRNIRS TKMQIMFQEI QMLKNKEGIL KAANEILQEK IEEQNVIFDM 180 SPIMTGFPYQ LTIPSDTFNT F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71692.1	5e-77	MIKC_MADS family protein