PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026409535.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 251aa MW: 28911.5 Da PI: 9.0816

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026409535.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.8	2.2e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRrng+lKKA+ELSvLCdaev +iifss+gklye++s XP_026409535.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSSRGKLYEFAS 59 79***********************************************86 PP
2	K-box	106.5	3e-35	77	171	5	99
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++s++e++++s++qe++kLk+++e+Lqr+qRhllGedL++Ls+keLq+Le+qLe +l + R++K+++++eq+eel++ke+ l ++nk+L++kle XP_026409535.1 77 QDSSTAERETQSWYQEVSKLKAKYESLQRSQRHLLGEDLGPLSVKELQSLEKQLEGALAQARQRKTQIMMEQMEELRRKERHLGDINKQLKNKLE 171 556689999***********************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVGLIIFSS RGKLYEFASA 60 GMNRTLERYQ HCCYTPQDSS TAERETQSWY QEVSKLKAKY ESLQRSQRHL LGEDLGPLSV 120 KELQSLEKQL EGALAQARQR KTQIMMEQME ELRRKERHLG DINKQLKNKL ETEGQGSLRA 180 IQASWESSAM VANNNYSVHP SQSNSMDCEP TLQIGYHNYV QQHQQQQQEE ANLARNVGNS 240 SENNFIQGWA L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	1e-104	MIKC_MADS family protein