PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026409548.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 25263.7 Da    PI: 9.287
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026409548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.21.2e-291059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rien + rqvtfskRrng+lKKA+ELSvLC+aeva+i+fs++gklye+ss
  XP_026409548.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCEAEVALIVFSPRGKLYEFSS 59
                    8***********************************************96 PP
2K-box81.42.1e-2784177497
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     s++k+ ee+++++l+ e+a+L+k+i nL+ ++R+l+Ge+Les+s+ eLq  e+qLeksl +iR+kKn+l++e+ie+l+ kek+l een+ L +k
  XP_026409548.1  84 SNNKAIEERNSQQLKYEAANLEKKIGNLEASKRKLMGEGLESCSIDELQTTENQLEKSLLSIRAKKNQLYREKIEQLKLKEKQLLEENEVLCEK 177
                     4455599**********************************************************************************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MVRGKTEMRR IENATSRQVT FSKRRNGLLK KAFELSVLCE AEVALIVFSP RGKLYEFSSS  60
SSSMQKTIVR YQKYNKDVQV NYNSNNKAIE ERNSQQLKYE AANLEKKIGN LEASKRKLMG  120
EGLESCSIDE LQTTENQLEK SLLSIRAKKN QLYREKIEQL KLKEKQLLEE NEVLCEKCGP  180
RQWEQQNQQR EITPYETSPD SYEVETELQI GRPERR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-68MIKC_MADS family protein