PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026411180.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 165aa    MW: 18628.1 Da    PI: 6.5001
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026411180.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.67.6e-14652550
                    SHHHHHHHHHHHHHHHHHHHHHHHHH.HT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvL.Cdaevaviifsstgklyeys 50
                    +  +r vtf kRr+gi  KA EL+ L  d+ v++i+fs+ gk +++ 
  XP_026411180.1  6 DPQKRMVTFLKRREGIKSKATELCRLfADIIVCIIVFSPGGKAFTFT 52
                    6679********************8868*****************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    
MVKIVDPQKR MVTFLKRREG IKSKATELCR LFADIIVCII VFSPGGKAFT FTNSPVGVCN  60
MVQRFLEEQR KGKKQERENV HRSKNSTQCR DKAGVGNGST DSFWWHNIDS EELGSCGEVK  120
AFDEDCIIED RNVEDAATSI TEKHEAGETC CKDQHNLDLS LNLGW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01530.11e-09M-type_MADS family protein