PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026412556.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C2H2

Protein Properties

Length: 374aa MW: 42899.5 Da PI: 7.8683

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026412556.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18	8e-06	66	87	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg sF + +Lk+H+ +H XP_026412556.1 66 TCQECGASFQKPAHLKQHMLSH 87 6*******************99 PP
2	zf-C2H2	17.9	8.4e-06	93	117	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp dC+ s++rk++L+rH+ H XP_026412556.1 93 FTCPvdDCHSSYRRKDHLNRHLLQH 117 89*******************9887 PP
3	zf-C2H2	15.8	3.8e-05	122	144	1	21
EEET..TTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHir 21 ++Cp C+k+F k n+krH XP_026412556.1 122 FSCPveGCNKRFAYKGNMKRHVE 144 89*******************86 PP
4	zf-C2H2	17.6	1.1e-05	163	187	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + C+ Cgk+F+ s L++H +H XP_026412556.1 163 HICQevGCGKVFKYASKLRKHEESH 187 679999***************9988 PP
5	zf-C2H2	13.9	0.00016	254	278	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C +F +ksnL++H ++ H XP_026412556.1 254 KCSfkGCECTFANKSNLNQHVKSvH 278 688889****************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MEKMEGEGGV VEKPRDIRRF YCEFCGICRS KKSLIASHRQ THHKEEIEMN MDGIDEQEEA 60 KSSNNTCQEC GASFQKPAHL KQHMLSHSLE RPFTCPVDDC HSSYRRKDHL NRHLLQHQGK 120 LFSCPVEGCN KRFAYKGNMK RHVEDIHDDE GSSSSDSQGQ TQHICQEVGC GKVFKYASKL 180 RKHEESHVKL ESVEAICCEP GCMKYFANND CLKAHVQSCH QHILCEVCGT KQLKKNMKRH 240 MRGHENEGSS ERIKCSFKGC ECTFANKSNL NQHVKSVHLE LRPFACQFPG CGQRFAFKHV 300 RDNHEKSGCH FYVHADFEEA DEQLQSRPRG GRKRTCPTVE TLLRKRVVPP SHTDSVLNHA 360 PEYLAWLLSA EDDC

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MEKMEGEGGV VEKPRDIRRF YCEFCGICRS KKSLIASHRQ THHKEEIEMN MDGIDEQEEA  60
KSSNNTCQEC GASFQKPAHL KQHMLSHSLE RPFTCPVDDC HSSYRRKDHL NRHLLQHQGK  120
LFSCPVEGCN KRFAYKGNMK RHVEDIHDDE GSSSSDSQGQ TQHICQEVGC GKVFKYASKL  180
RKHEESHVKL ESVEAICCEP GCMKYFANND CLKAHVQSCH QHILCEVCGT KQLKKNMKRH  240
MRGHENEGSS ERIKCSFKGC ECTFANKSNL NQHVKSVHLE LRPFACQFPG CGQRFAFKHV  300
RDNHEKSGCH FYVHADFEEA DEQLQSRPRG GRKRTCPTVE TLLRKRVVPP SHTDSVLNHA  360
PEYLAWLLSA EDDC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	233	239	LKKNMKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-112	C2H2 family protein