PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026414136.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 409aa MW: 43621.2 Da PI: 8.2408

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026414136.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.3	1.3e-08	52	78	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t C++G +CkF+H++ XP_026414136.1 52 PGEPACPYFLKTKKCRFGFKCKFNHPK 78 57899********************96 PP
2	zf-CCCH	34.8	2.8e-11	102	125	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C f+ +tG+Ck+G++CkF+H++ XP_026414136.1 102 PPCAFYVKTGICKFGESCKFHHPK 125 89********************96 PP
3	zf-CCCH	38.8	1.6e-12	176	202	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG CkyG++C+++H++ XP_026414136.1 176 PGEVDCPFYLKTGSCKYGATCRYSHPE 202 57899********************96 PP
4	zf-CCCH	36.9	6.1e-12	262	286	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C f+++tG Ck+G+rCk++H+ XP_026414136.1 262 GQTECAFYMKTGDCKFGERCKYHHP 286 6789********************8 PP
5	zf-CCCH	41.8	1.8e-13	315	338	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+f+++tG CkyG++C+F H+p XP_026414136.1 315 VVCPFYMKTGACKYGSSCRFDHPP 338 67********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MTDIGFLQFH NSPYGHLVLM RLLLSAVVLL VLSVLLPKVP LVPLGDTLPE RPGEPACPYF 60 LKTKKCRFGF KCKFNHPKDI AKSVDASKIV DLSLLPERPY APPCAFYVKT GICKFGESCK 120 FHHPKDIQIP VTGQENGCAE HDASVGSFDR IMSVKPPFVP FTPASLHNTK GLPVRPGEVD 180 CPFYLKTGSC KYGATCRYSH PERAVINISV APGLGQAMMT SSASSMNVGL INPAALVLPT 240 IDPRLGQAAL GLGVAVYPQR PGQTECAFYM KTGDCKFGER CKYHHPIDRT AATQPMPKQD 300 VKLTLAGLPR REGAVVCPFY MKTGACKYGS SCRFDHPPPG EAVAMATVVQ GSSSAPPSGE 360 AIAMPTVTQG SSDAAEGGEG NNNNNNNNNE GGGDHTIVPE AAISFGSTS

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MTDIGFLQFH NSPYGHLVLM RLLLSAVVLL VLSVLLPKVP LVPLGDTLPE RPGEPACPYF  60
LKTKKCRFGF KCKFNHPKDI AKSVDASKIV DLSLLPERPY APPCAFYVKT GICKFGESCK  120
FHHPKDIQIP VTGQENGCAE HDASVGSFDR IMSVKPPFVP FTPASLHNTK GLPVRPGEVD  180
CPFYLKTGSC KYGATCRYSH PERAVINISV APGLGQAMMT SSASSMNVGL INPAALVLPT  240
IDPRLGQAAL GLGVAVYPQR PGQTECAFYM KTGDCKFGER CKYHHPIDRT AATQPMPKQD  300
VKLTLAGLPR REGAVVCPFY MKTGACKYGS SCRFDHPPPG EAVAMATVVQ GSSSAPPSGE  360
AIAMPTVTQG SSDAAEGGEG NNNNNNNNNE GGGDHTIVPE AAISFGSTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-122	C3H family protein