PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026414899.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

ARF

Protein Properties

Length: 566aa MW: 61930.9 Da PI: 8.3664

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026414899.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	123	224	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +++ XP_026414899.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL--RTE 213 89**************************986444444..8999*****************************************..458 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_026414899.1 214 NGDLCVGIRRA 224 8999**997 PP
2	Auxin_resp	119.4	2.8e-39	294	377	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eF+vk+++v++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp++Wp+S+Wr+L+ XP_026414899.1 294 AANLAANGQPFEVVYYPRASTPEFCVKASSVRTAVRNQWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPIHWPGSPWRLLQ 377 7899******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence
MIKFFDSVKE EKKEMEKCLD SQLWHACAGG MVQMPQVNSK VYYFPQGQAE HANGNVDFEN 60 SSRIPAMILC RVAGVKFMAD SETDEVYSKL RLIPVRNNES DFEDDGVNGN NGSDSAQDKP 120 ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTVLAKDVHG EVWKFRHIYR 180 GTPRRHLLTT GWSTFVNQKK LIAGDSIVFL RTENGDLCVG IRRAKRGIGG GPEASSGWNS 240 ASGNCVSPYA GYSVFMREDE SKLGRNANGG NNNSPCGGGF RGKPKVRPES VVEAANLAAN 300 GQPFEVVYYP RASTPEFCVK ASSVRTAVRN QWCPGMRFKM AFETEDSSRI SWFMGTISSV 360 QVADPIHWPG SPWRLLQVTW DEPDLLQNVK RVSPWLVELV SSMPSIHLSS PFSPPRKKIR 420 VPQHPDFSFD GQLQMPSLLS NPFGPSSPSC CVSDNSSAGI QGARHAQFGI SLSDLHFNKL 480 QPGVFVTGLQ RPHHAAPPSR ISGGFIMSNP SCKENVSCLL TMGMGNGNST PTSKKSNDSK 540 TAQFVLFGQP ILTEEQISLS VRGGPM

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence

MIKFFDSVKE EKKEMEKCLD SQLWHACAGG MVQMPQVNSK VYYFPQGQAE HANGNVDFEN  60
SSRIPAMILC RVAGVKFMAD SETDEVYSKL RLIPVRNNES DFEDDGVNGN NGSDSAQDKP  120
ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTVLAKDVHG EVWKFRHIYR  180
GTPRRHLLTT GWSTFVNQKK LIAGDSIVFL RTENGDLCVG IRRAKRGIGG GPEASSGWNS  240
ASGNCVSPYA GYSVFMREDE SKLGRNANGG NNNSPCGGGF RGKPKVRPES VVEAANLAAN  300
GQPFEVVYYP RASTPEFCVK ASSVRTAVRN QWCPGMRFKM AFETEDSSRI SWFMGTISSV  360
QVADPIHWPG SPWRLLQVTW DEPDLLQNVK RVSPWLVELV SSMPSIHLSS PFSPPRKKIR  420
VPQHPDFSFD GQLQMPSLLS NPFGPSSPSC CVSDNSSAGI QGARHAQFGI SLSDLHFNKL  480
QPGVFVTGLQ RPHHAAPPSR ISGGFIMSNP SCKENVSCLL TMGMGNGNST PTSKKSNDSK  540
TAQFVLFGQP ILTEEQISLS VRGGPM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein