PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026415006.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

ARF

Protein Properties

Length: 794aa MW: 87839.3 Da PI: 5.7993

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026415006.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.2	1.6e-23	167	268	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++i+r++++r++lt+GW+ Fv++++L +gD v+F + ++ XP_026415006.1 167 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVATDLHGVQWRFRHIFRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEN 258 99**************************963.3445679********************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_026415006.1 259 GELRLGIRRA 268 999**996 PP
2	Auxin_resp	107.8	1.2e-35	293	373	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 +a+a+st+s+F+v+++Pra ++eFv +++k++k+++++ +vGmRfkm+fe+ed +er+ G+v+gvsdldp+rW++SkWr+Lk XP_026415006.1 293 VANAVSTRSMFHVFHSPRANPAEFVTPYKKYLKSINHPAAVGMRFKMRFEMEDTAERS--GLVTGVSDLDPYRWRDSKWRCLK 373 689****************************************************9..*******************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence
MEFDLNHDMK EGDNIVSYHG DYDKDGVAGG GGCSLSSSSS CCSSNSASSS IYLELWHACA 60 GPLTSLPKKG SVVVYFPQGH LEQANSSPSL PCSENPSFGL QPQIFCRVVN VQLLANKEND 120 EVYTQLTLFP QPESGNINLG GKGHEEEVGV EEEGVGDLPS KSTPHMFCKT LTASDTSTHG 180 GFSVPRRAAE DCFPPLDYKQ QRPSQELVAT DLHGVQWRFR HIFRGQPRRH LLTTGWSIFV 240 SQKNLVSGDA VLFLRGENGE LRLGIRRAGR PRNSIPNSIL GDQITNLNIL SPVANAVSTR 300 SMFHVFHSPR ANPAEFVTPY KKYLKSINHP AAVGMRFKMR FEMEDTAERS GLVTGVSDLD 360 PYRWRDSKWR CLKVMWDDDL VGDHFDRISP WEIEPTSSAP VLSIPSAPRL KKLRTLESTS 420 PDHPVSGPGG VEFLGFNESG RSSKVLQGQE NLGLRSPFYV GDGKNQIVDF AMPNSTNRSL 480 ASSGFQEIGI SDRFRAQPST FTGFSGSSRF QVLQGQEIFP SLSVHGRTDF NQIGSDKSNP 540 HSIMFNSYQR PYPNFYPLAS TDVRAMLMPY TDKFKENPDF MTNSQREPMQ SNLSSTQQSF 600 SGFSAMTGDE ICNSSYPNLV KEQRPVNSVS PPPVAETNLG SHSDELQDGT KVCKLFGFSL 660 TGEVPTSNSP NSSKRSCTKV HKQGNLVGRA VDLSRLDSYT DLLSELEKLF NMEGLLSNPE 720 KGWQIVYTDS ENDMMVVGDD PWHEFCSIVS KIHIYTQEEV EKMTIGMISD DTQSCLEEAP 780 PAVLDVSKSL MDFK

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence

MEFDLNHDMK EGDNIVSYHG DYDKDGVAGG GGCSLSSSSS CCSSNSASSS IYLELWHACA  60
GPLTSLPKKG SVVVYFPQGH LEQANSSPSL PCSENPSFGL QPQIFCRVVN VQLLANKEND  120
EVYTQLTLFP QPESGNINLG GKGHEEEVGV EEEGVGDLPS KSTPHMFCKT LTASDTSTHG  180
GFSVPRRAAE DCFPPLDYKQ QRPSQELVAT DLHGVQWRFR HIFRGQPRRH LLTTGWSIFV  240
SQKNLVSGDA VLFLRGENGE LRLGIRRAGR PRNSIPNSIL GDQITNLNIL SPVANAVSTR  300
SMFHVFHSPR ANPAEFVTPY KKYLKSINHP AAVGMRFKMR FEMEDTAERS GLVTGVSDLD  360
PYRWRDSKWR CLKVMWDDDL VGDHFDRISP WEIEPTSSAP VLSIPSAPRL KKLRTLESTS  420
PDHPVSGPGG VEFLGFNESG RSSKVLQGQE NLGLRSPFYV GDGKNQIVDF AMPNSTNRSL  480
ASSGFQEIGI SDRFRAQPST FTGFSGSSRF QVLQGQEIFP SLSVHGRTDF NQIGSDKSNP  540
HSIMFNSYQR PYPNFYPLAS TDVRAMLMPY TDKFKENPDF MTNSQREPMQ SNLSSTQQSF  600
SGFSAMTGDE ICNSSYPNLV KEQRPVNSVS PPPVAETNLG SHSDELQDGT KVCKLFGFSL  660
TGEVPTSNSP NSSKRSCTKV HKQGNLVGRA VDLSRLDSYT DLLSELEKLF NMEGLLSNPE  720
KGWQIVYTDS ENDMMVVGDD PWHEFCSIVS KIHIYTQEEV EKMTIGMISD DTQSCLEEAP  780
PAVLDVSKSL MDFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein