PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026418000.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family LBD
Protein Properties Length: 235aa    MW: 25393.5 Da    PI: 6.6621
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026418000.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.11.6e-39381391101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC ++C++apyf ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dP+yG+v++il+lqqq+++l+ael
  XP_026418000.1  38 PCGACKFLRRKCISGCIFAPYFGSDQgAARFAAVHKVFGASNVSKLLLHIPLNQRHDAVITISYEAQARLSDPIYGCVSTILALQQQVASLQAEL 132
                     7***********************9989******************************************************************* PP

          DUF260  95 allkeel 101
                     ++++++l
  XP_026418000.1 133 SMVQSQL 139
                     ***9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MDEHQGDDNS GMPPPEGTRR GGMGKRVAPP FSSATSAPCG ACKFLRRKCI SGCIFAPYFG  60
SDQGAARFAA VHKVFGASNV SKLLLHIPLN QRHDAVITIS YEAQARLSDP IYGCVSTILA  120
LQQQVASLQA ELSMVQSQLL SSRLAVANAL QSSQQQQQVA VLQPAYSNNS SSSNNLVNLT  180
STFPSNFDLT GETVPSGSLI NKTFQQSVPP IQDEEEDEEE SRHPVIFTNQ ILNRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.15e-57LBD family protein