PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026419706.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 444aa MW: 48388.6 Da PI: 8.5953

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026419706.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.9	4.2e-09	52	77	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C ++ rtG C++G +C+F+H+p XP_026419706.1 52 GEQDCTYYIRTGLCRFGMTCRFNHPP 77 6789********************97 PP
2	zf-CCCH	38.8	1.5e-12	98	122	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_026419706.1 98 QPECQYYLKTGTCKFGATCKFHHPR 122 799********************96 PP
3	zf-CCCH	33.8	5.6e-11	145	168	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++Ck++H++ XP_026419706.1 145 QECAYYLRTGQCKFGNTCKYNHPQ 168 58********************97 PP
4	zf-CCCH	38.5	2e-12	304	329	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ XP_026419706.1 304 DQPECQFYMKTGDCKFGAVCRFHHPR 329 689*********************96 PP
5	zf-CCCH	40.1	6.1e-13	349	375	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_026419706.1 349 PGEPLCIFYSRYGICKFGPNCKFDHPM 375 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MDYDARIQMS RGIVVTEGGS SLSPPLDEET LWQLNLRANE AMDPGPYPER PGEQDCTYYI 60 RTGLCRFGMT CRFNHPPNRK LAIAAARMKG GYPERVGQPE CQYYLKTGTC KFGATCKFHH 120 PRDKAGIAGR VLLNILGYPL RTNEQECAYY LRTGQCKFGN TCKYNHPQPS SSMVSLRGSP 180 VYPAVQSPTT PGQQSYPGGI TNWVSRASFI ASPRWQGPSS YAPLILPQGV VPVQGWNAYA 240 GQLGSGSSSE SQQQTSGSSQ FYGTTRPSDT TSVGVQGFSS FRSGSAPSGI YALQRENVFP 300 ERPDQPECQF YMKTGDCKFG AVCRFHHPRE RLIPIPNCLL SPLGLPLRPG EPLCIFYSRY 360 GICKFGPNCK FDHPMGPFSF GISASSSVDV PIVRRLLGSS AGSAALPLAS DGSVEAGSGR 420 PRRLSLSEAR QMPSSDENID PEVS

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MDYDARIQMS RGIVVTEGGS SLSPPLDEET LWQLNLRANE AMDPGPYPER PGEQDCTYYI  60
RTGLCRFGMT CRFNHPPNRK LAIAAARMKG GYPERVGQPE CQYYLKTGTC KFGATCKFHH  120
PRDKAGIAGR VLLNILGYPL RTNEQECAYY LRTGQCKFGN TCKYNHPQPS SSMVSLRGSP  180
VYPAVQSPTT PGQQSYPGGI TNWVSRASFI ASPRWQGPSS YAPLILPQGV VPVQGWNAYA  240
GQLGSGSSSE SQQQTSGSSQ FYGTTRPSDT TSVGVQGFSS FRSGSAPSGI YALQRENVFP  300
ERPDQPECQF YMKTGDCKFG AVCRFHHPRE RLIPIPNCLL SPLGLPLRPG EPLCIFYSRY  360
GICKFGPNCK FDHPMGPFSF GISASSSVDV PIVRRLLGSS AGSAALPLAS DGSVEAGSGR  420
PRRLSLSEAR QMPSSDENID PEVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-157	C3H family protein