PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026419710.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 442aa MW: 48203.4 Da PI: 8.5953

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026419710.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.9	4.1e-09	52	77	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C ++ rtG C++G +C+F+H+p XP_026419710.1 52 GEQDCTYYIRTGLCRFGMTCRFNHPP 77 6789********************97 PP
2	zf-CCCH	38.8	1.5e-12	98	122	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ XP_026419710.1 98 QPECQYYLKTGTCKFGATCKFHHPR 122 799********************96 PP
3	zf-CCCH	33.8	5.6e-11	145	168	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++Ck++H++ XP_026419710.1 145 QECAYYLRTGQCKFGNTCKYNHPQ 168 58********************97 PP
4	zf-CCCH	38.5	2e-12	302	327	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ XP_026419710.1 302 DQPECQFYMKTGDCKFGAVCRFHHPR 327 689*********************96 PP
5	zf-CCCH	40.1	6.1e-13	347	373	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_026419710.1 347 PGEPLCIFYSRYGICKFGPNCKFDHPM 373 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MDYDARIQMS RGIVVTEGGS SLSPPLDEET LWQLNLRANE AMDPGPYPER PGEQDCTYYI 60 RTGLCRFGMT CRFNHPPNRK LAIAAARMKG GYPERVGQPE CQYYLKTGTC KFGATCKFHH 120 PRDKAGIAGR VLLNILGYPL RTNEQECAYY LRTGQCKFGN TCKYNHPQPS SSMVSLRGSP 180 VYPAVQSPTT PGQQSYPGGI TNWVSRASFI ASPRWQGPSS YAPLILPQGV VPVQGWNAYA 240 LGSGSSSESQ QQTSGSSQFY GTTRPSDTTS VGVQGFSSFR SGSAPSGIYA LQRENVFPER 300 PDQPECQFYM KTGDCKFGAV CRFHHPRERL IPIPNCLLSP LGLPLRPGEP LCIFYSRYGI 360 CKFGPNCKFD HPMGPFSFGI SASSSVDVPI VRRLLGSSAG SAALPLASDG SVEAGSGRPR 420 RLSLSEARQM PSSDENIDPE VS

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MDYDARIQMS RGIVVTEGGS SLSPPLDEET LWQLNLRANE AMDPGPYPER PGEQDCTYYI  60
RTGLCRFGMT CRFNHPPNRK LAIAAARMKG GYPERVGQPE CQYYLKTGTC KFGATCKFHH  120
PRDKAGIAGR VLLNILGYPL RTNEQECAYY LRTGQCKFGN TCKYNHPQPS SSMVSLRGSP  180
VYPAVQSPTT PGQQSYPGGI TNWVSRASFI ASPRWQGPSS YAPLILPQGV VPVQGWNAYA  240
LGSGSSSESQ QQTSGSSQFY GTTRPSDTTS VGVQGFSSFR SGSAPSGIYA LQRENVFPER  300
PDQPECQFYM KTGDCKFGAV CRFHHPRERL IPIPNCLLSP LGLPLRPGEP LCIFYSRYGI  360
CKFGPNCKFD HPMGPFSFGI SASSSVDVPI VRRLLGSSAG SAALPLASDG SVEAGSGRPR  420
RLSLSEARQM PSSDENIDPE VS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-158	C3H family protein