PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026419853.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 260aa MW: 29208.4 Da PI: 10.1026

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026419853.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	72.8	2.9e-23	17	65	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 krie + rqvtfskRr g++KKA+ELS+LC+ae+a+i+fs+ gk + + XP_026419853.1 17 KRIEKEDARQVTFSKRRGGVFKKAHELSTLCGAEIAIIVFSPAGKPFSF 65 79******************************************96655 PP
2	K-box	13.7	2.6e-06	116	166	25	75
K-box 25 kkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 + + ++++++++ ++++++L + eL+qL ++e+ k+ ++ +elll+ XP_026419853.1 116 AELKKIMKENKKQFWWDNIDDLGVHELEQLSAAIEDLKIKVADRADELLLT 166 45556789***************************9999999998888876 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MAATRKPSMG RQKIEIKRIE KEDARQVTFS KRRGGVFKKA HELSTLCGAE IAIIVFSPAG 60 KPFSFTHPHN MIHRYLSGNS HPTPLVTAHR EAKIRELNRE YTEALGRLEA EKKRGAELKK 120 IMKENKKQFW WDNIDDLGVH ELEQLSAAIE DLKIKVADRA DELLLTSYLP GKNPGTSSSG 180 TSQSENSSTI TFETKPTIIP NHQQIHTSSL PQHGYGADFG FVWTQRALLS IRSALCSDFI 240 ISMHTVLLHG RKPSLYGSHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	6e-37	M-type_MADS family protein