PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026420004.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 240aa    MW: 27478.9 Da    PI: 4.8024
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026420004.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.53.1e-221761145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    ++i++ks+ qvtfskRr+g++KKA ELSvL++a+va+i fs+ g+
  XP_026420004.1 17 EKIKDKSRLQVTFSKRRKGLFKKATELSVLTGAQVALIAFSPAGR 61
                    579***************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MKKQRKGGDG RKRIKIEKIK DKSRLQVTFS KRRKGLFKKA TELSVLTGAQ VALIAFSPAG  60
RPYVCGNPDL LLDRFVSGEA YEIHQKYDDP EQRRYMEVEN ELEAEKKRGV FLESLINYDL  120
GPGKDKSWWD TYVDGLSLDE LKQMKSDMEQ LQKCVAKRSH VLKMTGTTAA SSSSSSYEDK  180
SLALMKLPAG NDDIVDDDYL NEEMINELVF DFDSQEYEFG TTTSTDQEIT ADMFSDDYYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-22M-type_MADS family protein