PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026420142.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

ARF

Protein Properties

Length: 746aa MW: 83233.1 Da PI: 5.6804

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026420142.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	78.7	6.1e-25	254	355	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+ltpsd++++g +++ +++a+e+ ++++++ ++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD+++F + ++ XP_026420142.1 254 FCKILTPSDTSTHGGFSVLRRHANEClppldmSQQPPC-QELVAKDLHGVEWRFRHIYRGQPKRHLLTSGWSTFVNSKKLVAGDTFIFI--RAED 345 99***************************7555556.5*********************************************..4599 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+++r+ XP_026420142.1 346 GELRVGFRRA 355 *****997 PP
2	Auxin_resp	100.5	2.2e-33	381	462	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+ha+st+s+F+v+Y+Pr+s+seF +++++++++++++++vG+Rfkm+++ e+++e r sGt vg+++ dpv+Wp S+W++L XP_026420142.1 381 ASHALSTGSMFSVYYRPRTSPSEFLIPYKQYMNSVRSSFAVGTRFKMRIDREEAPEERPSGTLVGIEEDDPVHWPCSQWKCL 462 789******************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 746 aa Download sequence
MPSQQTSQHT PTKRHVSKSP AIKKKQKNQP SIELDEEHDT LEALSDDDEE CGETDTDLDE 60 EEPDRYEEGK SDRQNYDDAE GEEVKEWTCD IGEKVVEVER GRGLLSKMMG CVGAEGLNLE 120 GICPDIIKDP TSLEQVLLCK SRDERDGIYG ALWNACAGPS VKIPRIGEKV FYFPQGHLEQ 180 VEAYTNQRTS SQMPVYDLPS KILCRVIYVQ LKAEMESDEV FAQVTLVPDS KQDEPGINKE 240 KLLFPPKNTK VYSFCKILTP SDTSTHGGFS VLRRHANECL PPLDMSQQPP CQELVAKDLH 300 GVEWRFRHIY RGQPKRHLLT SGWSTFVNSK KLVAGDTFIF IRAEDGELRV GFRRASSKMQ 360 SYPSTSVISS HTMQLGILAT ASHALSTGSM FSVYYRPRTS PSEFLIPYKQ YMNSVRSSFA 420 VGTRFKMRID REEAPEERPS GTLVGIEEDD PVHWPCSQWK CLVAHWDEPS SSVPRPLRIS 480 PWMIEPLSAA TNMQQVQSRT KRLRTSQASP DESSTLCNDA PSLGLSLGST EHAPPLPGQS 540 SGVFHGQENG QIPSNPNLIP PRNYNWGQNP FPFQRNDPFY MDPGNNLPIN CAYQDVSRFG 600 SNFHPPLFST CNDSSNSGFS ENRSVPQFSF PSSGFPGMMG HAHDEVPMHQ QRDSSPCMLF 660 GVDLVKIPMG TTPASEMSFP QFFHDNCHVP HFGMVDSDQI SDSSKITNPS YSSGSGSGVE 720 KPCQSCSNTP TKFYKGISTS SSKDLH

Sequence ? help Back to Top

Protein Sequence Length: 746 aa Download sequence

MPSQQTSQHT PTKRHVSKSP AIKKKQKNQP SIELDEEHDT LEALSDDDEE CGETDTDLDE  60
EEPDRYEEGK SDRQNYDDAE GEEVKEWTCD IGEKVVEVER GRGLLSKMMG CVGAEGLNLE  120
GICPDIIKDP TSLEQVLLCK SRDERDGIYG ALWNACAGPS VKIPRIGEKV FYFPQGHLEQ  180
VEAYTNQRTS SQMPVYDLPS KILCRVIYVQ LKAEMESDEV FAQVTLVPDS KQDEPGINKE  240
KLLFPPKNTK VYSFCKILTP SDTSTHGGFS VLRRHANECL PPLDMSQQPP CQELVAKDLH  300
GVEWRFRHIY RGQPKRHLLT SGWSTFVNSK KLVAGDTFIF IRAEDGELRV GFRRASSKMQ  360
SYPSTSVISS HTMQLGILAT ASHALSTGSM FSVYYRPRTS PSEFLIPYKQ YMNSVRSSFA  420
VGTRFKMRID REEAPEERPS GTLVGIEEDD PVHWPCSQWK CLVAHWDEPS SSVPRPLRIS  480
PWMIEPLSAA TNMQQVQSRT KRLRTSQASP DESSTLCNDA PSLGLSLGST EHAPPLPGQS  540
SGVFHGQENG QIPSNPNLIP PRNYNWGQNP FPFQRNDPFY MDPGNNLPIN CAYQDVSRFG  600
SNFHPPLFST CNDSSNSGFS ENRSVPQFSF PSSGFPGMMG HAHDEVPMHQ QRDSSPCMLF  660
GVDLVKIPMG TTPASEMSFP QFFHDNCHVP HFGMVDSDQI SDSSKITNPS YSSGSGSGVE  720
KPCQSCSNTP TKFYKGISTS SSKDLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.3	1e-169	ARF family protein