PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026420493.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 186aa    MW: 21193.2 Da    PI: 10.2075
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026420493.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.88e-101555343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i++ + r v++  R +g  K  +EL++LC+a+ + i+ ++ 
  XP_026420493.1 15 IKDRRARRVSYRHRSKGFVKLVSELCILCGADGCAIVCGPY 55
                    8999*********************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MARIMRKGKL LLAYIKDRRA RRVSYRHRSK GFVKLVSELC ILCGADGCAI VCGPYPDLKP  60
QAWPTDQPEM QHVLMKFNSI SLEERHMKML NHRSFLNNQI TKLDDKSQKQ ERENRNEELS  120
KIVRQALNGK RSAVNRTDLG DLNNTGNSTA IIMIPNPSTN YTRSYANRGY GMDNGFEFNG  180
GVNAES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.22e-18M-type_MADS family protein