PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026421227.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 197aa    MW: 22405.2 Da    PI: 4.6751
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026421227.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF663.7e-211159149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k i +  +r+vtfskRr+g++KKA EL+ L++a++++ +fs++g+ly++
  XP_026421227.1 11 KMIHDRKKRSVTFSKRRQGLFKKADELCRLTGADISLSVFSPSGRLYTF 59
                    67999*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MGTGRKKIEI KMIHDRKKRS VTFSKRRQGL FKKADELCRL TGADISLSVF SPSGRLYTFG  60
CPNSDEVLYR FPVKEEEKEV DGDGNNSRSE NGDGFWWNDL NIVELDTLEK VDAVTEQLLQ  120
VQNLVVKRKE ELLAALSTTS AAANETTTGN MEDSCMFSVK QEGDSWFPSL TSGYMNEFDE  180
LLKDFYVDQK MQQLPAY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1519RKKIEIKMIHDRKKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.16e-22M-type_MADS family protein