PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026421712.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 488aa MW: 51666.9 Da PI: 7.9049

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026421712.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.7	1.5e-11	63	88	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +++rtG C yG rC+F+H++ XP_026421712.1 63 GEPNCVYYMRTGSCGYGIRCRFNHPR 88 5799********************96 PP
2	zf-CCCH	43.1	7.2e-14	109	134	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f++tGtCk+G++CkF+H++ XP_026421712.1 109 GEPVCQYFMKTGTCKFGSSCKFNHPK 134 6799********************96 PP
3	zf-CCCH	35.4	1.9e-11	155	180	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G++CkF+H++ XP_026421712.1 155 GEKECSYYIKTGQCKFGETCKFHHPQ 180 7899********************97 PP
4	zf-CCCH	36.2	1e-11	313	337	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++Cr+++rtG CkyG+ C+++H+p XP_026421712.1 313 LPECRYYMRTGDCKYGSMCRYHHPP 337 689********************97 PP
5	zf-CCCH	32.8	1.2e-10	358	382	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C ffa++G Ck+G++Ck+ H++ XP_026421712.1 358 APPCTFFAQYGVCKFGPTCKYDHPM 382 689********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MHSRIPRMEG TNTDPPSIDW NNNTGVGVVV SETGLEESMW QLGLGGGGRR NTTSGSSYPE 60 RLGEPNCVYY MRTGSCGYGI RCRFNHPRDR TLALGAVRQG EADYPEREGE PVCQYFMKTG 120 TCKFGSSCKF NHPKFEGGTG NAVLLNYYGY PLRPGEKECS YYIKTGQCKF GETCKFHHPQ 180 PSSPTVPAPA PEFYQAVQSS LVPSTQQFGG VPASWQVGRP PMMPGSFVQG TYGSVLVSGG 240 MVPISGWSPY PGSVGQVASP SNQPTFGAGS PYGVTRLSPS APAYTGAPPP LPTSAAISSS 300 GEKETVYPDR PGLPECRYYM RTGDCKYGSM CRYHHPPEFI APNTMVLSPM GLPLRPGAPP 360 CTFFAQYGVC KFGPTCKYDH PMGTLSYSPS ASSLTDMPVA PYPVGSSPTT LAPSSSSSEL 420 RQELITGSSK ESFITRVPSS ENASSGSVGS IFSKSSIVPH SSLPLAGQSS APSTGSSAGH 480 DGEIAGSS

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MHSRIPRMEG TNTDPPSIDW NNNTGVGVVV SETGLEESMW QLGLGGGGRR NTTSGSSYPE  60
RLGEPNCVYY MRTGSCGYGI RCRFNHPRDR TLALGAVRQG EADYPEREGE PVCQYFMKTG  120
TCKFGSSCKF NHPKFEGGTG NAVLLNYYGY PLRPGEKECS YYIKTGQCKF GETCKFHHPQ  180
PSSPTVPAPA PEFYQAVQSS LVPSTQQFGG VPASWQVGRP PMMPGSFVQG TYGSVLVSGG  240
MVPISGWSPY PGSVGQVASP SNQPTFGAGS PYGVTRLSPS APAYTGAPPP LPTSAAISSS  300
GEKETVYPDR PGLPECRYYM RTGDCKYGSM CRYHHPPEFI APNTMVLSPM GLPLRPGAPP  360
CTFFAQYGVC KFGPTCKYDH PMGTLSYSPS ASSLTDMPVA PYPVGSSPTT LAPSSSSSEL  420
RQELITGSSK ESFITRVPSS ENASSGSVGS IFSKSSIVPH SSLPLAGQSS APSTGSSAGH  480
DGEIAGSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-143	C3H family protein