PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026422916.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

Whirly

Protein Properties

Length: 279aa MW: 31217.3 Da PI: 9.6655

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026422916.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	206.8	2.5e-64	98	236	1	139
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 s+yk+kaal+v+++ p+f l+sg+ kl+++G++ll++a+++++r+ydW++kq+f+ls+te+a l++l+ k+sceffhdp++++s+eGkvrk+lk XP_026422916.1 98 SIYKGKAALTVEPISPEFLPLESGAYKLSKEGFVLLQFAPSVGVRQYDWNRKQVFSLSVTEIAALMNLGLKDSCEFFHDPFKGKSEEGKVRKVLK 192 7******************************************************************************************** PP Whirly 96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 vePlpdGsG+f+nl+v+n+l++++e++++Pv+kae +vl+s+++ XP_026422916.1 193 VEPLPDGSGHFFNLNVQNKLLNVDENIYIPVTKAELTVLNSAFS 236 **************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MEYVPTSSLT LQHPKITSLK NNFNSSSINP SSSSSSSSYS LTRICVKPSQ SNNKNKFTIK 60 CRNSEYFQKQ QQRYTKPSEE TFSSQALGAA TRVFVGHSIY KGKAALTVEP ISPEFLPLES 120 GAYKLSKEGF VLLQFAPSVG VRQYDWNRKQ VFSLSVTEIA ALMNLGLKDS CEFFHDPFKG 180 KSEEGKVRKV LKVEPLPDGS GHFFNLNVQN KLLNVDENIY IPVTKAELTV LNSAFSYILP 240 YLLGWHTFVN SVKPSDTSRV NNNTNMRSGA ETADLEWSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14410.1	1e-108	Whirly family protein