PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026423159.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

C3H

Protein Properties

Length: 446aa MW: 48753.9 Da PI: 7.5697

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026423159.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.8	1.2e-10	43	68	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C ++ rtG C yG++C+F+H+ XP_026423159.1 43 PGEPDCIYYIRTGLCGYGNNCRFNHP 68 5789*********************8 PP
2	zf-CCCH	37	5.8e-12	89	112	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++f++tGtC++G +Ck++H++ XP_026423159.1 89 PDCQYFLKTGTCRFGVTCKYNHPQ 112 79********************97 PP
3	zf-CCCH	34.2	4.2e-11	133	157	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtG CkyG CkF+H++ XP_026423159.1 133 EKPCPHYMRTGVCKYGFACKFNHPQ 157 689********************97 PP
4	zf-CCCH	39.3	1.1e-12	284	309	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tGtCk+G++Ck++H++ XP_026423159.1 284 DQPECQYYMKTGTCKFGPTCKYHHPR 309 689*********************96 PP
5	zf-CCCH	31.9	2.3e-10	329	354	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C f++ +G+Ck+G +Ck+ H+ XP_026423159.1 329 PGQAICTFYSLYGICKFGLSCKYDHP 354 5789*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MPDSWKVKIN ASPDNLQEAM WRLKIQAQNG GVVANSSLYP DRPGEPDCIY YIRTGLCGYG 60 NNCRFNHPSS YPGQVAQYRG ELPERDGLPD CQYFLKTGTC RFGVTCKYNH PQDKDDARQI 120 QLNMLGLPIR QEEKPCPHYM RTGVCKYGFA CKFNHPQPAA VGSLPPITGN ASFGSTGSSV 180 APPLSGLPYV GGIPAWTLPT TPYLSGHRMQ GPQAYMPVVL SSSQGIITAP QGWNTYSGTA 240 NPVSSTNVLG SNFIYSSKHQ GELGINGQVH MLQTPEPQFP ERPDQPECQY YMKTGTCKFG 300 PTCKYHHPRE RTAPLATSTL SPYGLPLRPG QAICTFYSLY GICKFGLSCK YDHPLTGLHN 360 YNLGIPALSI PDPTFSCKRI STLAGSEEKS PSKSSISLSD QNEETDTTSI KHQCMDAETS 420 EEPKQQAVSS VNTSTTSLQL PLDASE

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MPDSWKVKIN ASPDNLQEAM WRLKIQAQNG GVVANSSLYP DRPGEPDCIY YIRTGLCGYG  60
NNCRFNHPSS YPGQVAQYRG ELPERDGLPD CQYFLKTGTC RFGVTCKYNH PQDKDDARQI  120
QLNMLGLPIR QEEKPCPHYM RTGVCKYGFA CKFNHPQPAA VGSLPPITGN ASFGSTGSSV  180
APPLSGLPYV GGIPAWTLPT TPYLSGHRMQ GPQAYMPVVL SSSQGIITAP QGWNTYSGTA  240
NPVSSTNVLG SNFIYSSKHQ GELGINGQVH MLQTPEPQFP ERPDQPECQY YMKTGTCKFG  300
PTCKYHHPRE RTAPLATSTL SPYGLPLRPG QAICTFYSLY GICKFGLSCK YDHPLTGLHN  360
YNLGIPALSI PDPTFSCKRI STLAGSEEKS PSKSSISLSD QNEETDTTSI KHQCMDAETS  420
EEPKQQAVSS VNTSTTSLQL PLDASE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	2e-96	C3H family protein