PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026426041.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

ARF

Protein Properties

Length: 567aa MW: 62072.1 Da PI: 8.3664

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026426041.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	123	224	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +++ XP_026426041.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL--RTE 213 89**************************986444444..8999*****************************************..458 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_026426041.1 214 NGDLCVGIRRA 224 8999**997 PP
2	Auxin_resp	119.2	3.3e-39	295	378	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eF+vk+++v++al++++++GmRfkmafetedss++++ +Gt+++v+ +dp++Wp+S+Wr+L+ XP_026426041.1 295 AANLATNGQPFEVVYYPRASTPEFCVKASSVRTALRNQWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPIHWPGSPWRLLQ 378 7899******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence
MIKFFDSVKE EKKEMEKCLD SQLWHACAGG MVQMPQVNSK VYYFPQGQAE HANGNVDFGN 60 SSRIPAMILC RVAGVKFMAD PETDEVYSKL RLIPVRNNES DFEDDDVNGN NGSDSAQDKP 120 ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTVLAKDVHG EVWKFRHIYR 180 GTPRRHLLTT GWSTFVNQKK LIAGDSIVFL RTENGDLCVG IRRAKRGIGG GPEASSGWNS 240 ASSNCVSPYA GYSVFMREDE SKLGRNANGG NNNSPCGGAG FRGKPKVRPE SVVEAANLAT 300 NGQPFEVVYY PRASTPEFCV KASSVRTALR NQWCPGMRFK MAFETEDSSR ISWFMGTISS 360 VQVADPIHWP GSPWRLLQVT WDEPDLLQNV KRVSPWLVEL VSSMPSIHLS SPFSPPRKKI 420 RVPQHPDFSF DGQLQMPSLL SNPFGPSSPS CCVSDNSSAG IQGARHAQFG ISLSDLHFNK 480 LQPGVFVTGL QRPHHAAPPS RISGGFIMSN PSCKENVSCL LTMGMGNGNS TPTSKKSNDS 540 KTAQFVLFGQ PILTEEQISL SVRGGPM

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence

MIKFFDSVKE EKKEMEKCLD SQLWHACAGG MVQMPQVNSK VYYFPQGQAE HANGNVDFGN  60
SSRIPAMILC RVAGVKFMAD PETDEVYSKL RLIPVRNNES DFEDDDVNGN NGSDSAQDKP  120
ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSAEPPV QTVLAKDVHG EVWKFRHIYR  180
GTPRRHLLTT GWSTFVNQKK LIAGDSIVFL RTENGDLCVG IRRAKRGIGG GPEASSGWNS  240
ASSNCVSPYA GYSVFMREDE SKLGRNANGG NNNSPCGGAG FRGKPKVRPE SVVEAANLAT  300
NGQPFEVVYY PRASTPEFCV KASSVRTALR NQWCPGMRFK MAFETEDSSR ISWFMGTISS  360
VQVADPIHWP GSPWRLLQVT WDEPDLLQNV KRVSPWLVEL VSSMPSIHLS SPFSPPRKKI  420
RVPQHPDFSF DGQLQMPSLL SNPFGPSSPS CCVSDNSSAG IQGARHAQFG ISLSDLHFNK  480
LQPGVFVTGL QRPHHAAPPS RISGGFIMSN PSCKENVSCL LTMGMGNGNS TPTSKKSNDS  540
KTAQFVLFGQ PILTEEQISL SVRGGPM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein