PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026426042.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family ARF
Protein Properties Length: 553aa    MW: 60332.1 Da    PI: 8.368
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026426042.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.89.8e-24109210199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +++
  XP_026426042.1 109 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL--RTE 199
                     89****************************986444444..8999*********************************************..458 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     ++ l+v+++r+
  XP_026426042.1 200 NGDLCVGIRRA 210
                     8999****997 PP
2Auxin_resp119.33.2e-39281364183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+++++FevvY+Prast+eF+vk+++v++al++++++GmRfkmafetedss++++ +Gt+++v+ +dp++Wp+S+Wr+L+
  XP_026426042.1 281 AANLATNGQPFEVVYYPRASTPEFCVKASSVRTALRNQWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPIHWPGSPWRLLQ 364
                     7899******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    
MEKCLDSQLW HACAGGMVQM PQVNSKVYYF PQGQAEHANG NVDFGNSSRI PAMILCRVAG  60
VKFMADPETD EVYSKLRLIP VRNNESDFED DDVNGNNGSD SAQDKPASFA KTLTQSDANN  120
GGGFSVPRYC AETIFPRLDY SAEPPVQTVL AKDVHGEVWK FRHIYRGTPR RHLLTTGWST  180
FVNQKKLIAG DSIVFLRTEN GDLCVGIRRA KRGIGGGPEA SSGWNSASSN CVSPYAGYSV  240
FMREDESKLG RNANGGNNNS PCGGAGFRGK PKVRPESVVE AANLATNGQP FEVVYYPRAS  300
TPEFCVKASS VRTALRNQWC PGMRFKMAFE TEDSSRISWF MGTISSVQVA DPIHWPGSPW  360
RLLQVTWDEP DLLQNVKRVS PWLVELVSSM PSIHLSSPFS PPRKKIRVPQ HPDFSFDGQL  420
QMPSLLSNPF GPSSPSCCVS DNSSAGIQGA RHAQFGISLS DLHFNKLQPG VFVTGLQRPH  480
HAAPPSRISG GFIMSNPSCK ENVSCLLTMG MGNGNSTPTS KKSNDSKTAQ FVLFGQPILT  540
EEQISLSVRG GPM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0ARF family protein