PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026426208.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

NF-YC

Protein Properties

Length: 255aa MW: 28434.1 Da PI: 4.6308

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026426208.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	36.7	9.4e-12	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +P l+ska elf+ +l r++ + + +t+ ++++v++ ++fdfl ++v + XP_026426208.1 1 MQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYDITLQRGAKTMSSLHLKQCVQSFNVFDFLKETVSK 69 899*************************************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MQADEDVGKI AMAVPLLVSK ALELFLQDLC DRTYDITLQR GAKTMSSLHL KQCVQSFNVF 60 DFLKETVSKV PDLGGSDAAG DDRHVSRRRK AADDEDHDSD EEAKRTRMQE AGHSSTSGRG 120 RGRGRGRGRG RGRAIEREST HAEKCDDDLD MSPQDDKQKL NTKRLDNGAE DEESRQSTAL 180 DSSGNQVLRN FDLNVELQDG HTSAHPVSRE LPPELKHEEY PGWSLADVDK MAIDPLQLAQ 240 LNQKIGEDED YDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	128	RGRGRGRGRG
2	119	129	RGRGRGRGRGR
3	121	130	RGRGRGRGRG
4	121	131	RGRGRGRGRGR
5	123	132	RGRGRGRGRG
6	123	133	RGRGRGRGRGR
7	125	134	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-52	NF-YC family protein