PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026427157.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family MIKC_MADS
Protein Properties Length: 274aa    MW: 31071.3 Da    PI: 8.8633
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026427157.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.69.1e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRr+g+lKKA+ELSvLCdaeva+iifsstgkl+e+ss
  XP_026427157.1  9 KRIENATSRQVTFSKRRAGLLKKAQELSVLCDAEVALIIFSSTGKLFEFSS 59
                    79***********************************************96 PP
2K-box59.51.4e-20761734100
           K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     s+++s +e   + + ++e++ Lk+ei++L+ ++ ++lG++L  L lkeLq+Le+qL++++  ++++K++ll++++++++ +e+++  en+ Lrk+
  XP_026427157.1  76 SETTSlVEYDPERQQSKEISILKDEISKLRMTHLRMLGKELMGLGLKELQHLEDQLNEGMLLVKARKDNLLYDELDQSRLQEERAVMENRILRKQ 170
                     45555445555567789****************************************************************************** PP

           K-box  98 lee 100
                     +ee
  XP_026427157.1 171 VEE 173
                     987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MGRGKIEIKR IENATSRQVT FSKRRAGLLK KAQELSVLCD AEVALIIFSS TGKLFEFSSS  60
GMKRTLSRYN KCQDNSETTS LVEYDPERQQ SKEISILKDE ISKLRMTHLR MLGKELMGLG  120
LKELQHLEDQ LNEGMLLVKA RKDNLLYDEL DQSRLQEERA VMENRILRKQ VEELQALVPS  180
TERTRPPYLE FHSMDRKPSS HTKHGLLSPK GVCHCSSEKR SSERHDDSDT SLHLGLAPDG  240
YYKKKAAERA SAERVSAERA SSSSNDSDTP MALS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.12e-65MIKC_MADS family protein