PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026427707.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 241aa MW: 28132.8 Da PI: 8.7325

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026427707.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.8	3e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA ELS+LCdaev ++ifsstgklye+ss XP_026427707.1 10 RIDNTTSRQVTFSKRRNGLLKKARELSILCDAEVGLMIFSSTGKLYEFSS 59 8***********************************************96 PP
2	K-box	76.9	5.4e-26	82	170	9	97
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++++a+ +++e+a L+ ++e+Lq+++R+l+G++L+sLs keLq+Le+qLe sl+ +R +K++ l+++i+el +k + l++en++L +k XP_026427707.1 82 NATSEAKIWKREVATLRHQLETLQENHRQLMGQELSSLSTKELQNLENQLEMSLRGVRMQKDRKLTDEIHELNRKGNLLHQENMELFRK 170 67788999******************************************************************************887 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MGRGKIVIRR IDNTTSRQVT FSKRRNGLLK KARELSILCD AEVGLMIFSS TGKLYEFSST 60 NMKSIIERYN TSKEDQHHPL MNATSEAKIW KREVATLRHQ LETLQENHRQ LMGQELSSLS 120 TKELQNLENQ LEMSLRGVRM QKDRKLTDEI HELNRKGNLL HQENMELFRK EHHIRQENMD 180 LLKKINEARD AHETNRVSHS PNGFNLEEED DECIILQLSQ PPQQNSATPQ NPTTVNRLQL 240 Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	6e-89	MIKC_MADS family protein