PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_026428093.1

Organism

Papaver somniferum

Taxonomic ID

3469

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver

Family

MIKC_MADS

Protein Properties

Length: 219aa MW: 25190.3 Da PI: 8.6096

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_026428093.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.7	7.1e-24	11	60	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k ien++nr+vt+skR++gilKKA EL +LC+a+v+vi++ ++gk ey XP_026428093.1 11 KYIENSTNRKVTYSKRKKGILKKARELTILCNAQVCVIMLPKSGKNAEYV 60 57*******************************************99996 PP
2	K-box	41.5	5.7e-15	73	145	1	71
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllG..edLesLslkeLqqLeqqLekslkkiRskKne 71 yq+ +++sl+ea++e lq+el+ ++ + L++e+R++ G +dL++ s++eL +Le++Le+sl+ +R++K + XP_026428093.1 73 YQRETNTSLWEAQYEALQEELRAQQEIGRRLKKEIRQRTGqeDDLSEFSIEELGSLEKNLEESLEIVRDRKAH 145 78889999******************************5558*************************76 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MGRRSGKLVI KYIENSTNRK VTYSKRKKGI LKKARELTIL CNAQVCVIML PKSGKNAEYV 60 SPSITMKDFL DRYQRETNTS LWEAQYEALQ EELRAQQEIG RRLKKEIRQR TGQEDDLSEF 120 SIEELGSLEK NLEESLEIVR DRKAHKEEQE FFYAVPGNSE RNQGPNYGSV SSLMRSESID 180 GRGGDFKSSE ITFLQLLQPS HTNLHNEAGG AYWYNQTIA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	9e-31	MIKC_MADS family protein