PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026428735.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family LBD
Protein Properties Length: 172aa    MW: 18977.1 Da    PI: 8.7571
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026428735.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.51.4e-40261251100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lr +C ++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe++r da+ss+vyeA+ r+r PvyG++g+i +lq+q++ l+a+la
  XP_026428735.1  26 PCAACKILRGRCGEKCVLAPYFPPTEPLKFTTAHRVFGASNITKMLQELPESQRVDAVSSMVYEANSRVRHPVYGCAGTIYQLQKQVSDLQAQLA 120
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     + ++e
  XP_026428735.1 121 KSQAE 125
                     99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
RAMTPMSCTN PNSIPAPSLP QVVITPCAAC KILRGRCGEK CVLAPYFPPT EPLKFTTAHR  60
VFGASNITKM LQELPESQRV DAVSSMVYEA NSRVRHPVYG CAGTIYQLQK QVSDLQAQLA  120
KSQAEIINVR SHQNSKILAV LCFLRLRYAL EESNPSSPSA LLIINCFELF SH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-63LBD family protein