PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_026428989.1
Organism
Papaver somniferum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Ranunculales; Papaveraceae; Papaveroideae; Papaver
Family M-type_MADS
Protein Properties Length: 242aa    MW: 27135.8 Da    PI: 4.5391
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_026428989.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.18.4e-17959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ie+  +r+v f+kRr+g++ KA  L+ L++a+++++++s+ g+ y++ss
  XP_026428989.1  9 KKIEDRQKRNVCFTKRRHGLFNKAADLCRLTGADISLLVISPGGNPYTFSS 59
                    68***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MGKRRIEMKK IEDRQKRNVC FTKRRHGLFN KAADLCRLTG ADISLLVISP GGNPYTFSSS  60
SSISWNDLNY RLKNTINFKE VKVADDERTR VSDDGFWWNN LNPEEIDSIE KLTAVRNQLL  120
DVKEKVAQRK QELLAAAEPI ATSTTTSTCT VGEMEEDSSL LEDDLEKLLS DAYDDAPNWL  180
PSIDDSGMLF EGLDYDESWL PLGIDTVLVL VGPAILLLLK PAKDAEKSFS CLSLLGSILP  240
YK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.14e-16M-type_MADS family protein